Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02308 ATGGAGGGTCCACAATCATATTTGGTCTTTGAGTACGCCAAAAATGGATCTTTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTTATTGCTTCGTGCTATTGTTTTTTGACATGGGACCAAAGGCTCAGGATCTGCCTTGATGTGGCCATGGCCTTGCAATATATGCACCAGGTTATGAAACCAAGCTATGTGCATAGAAATGTAAAGAGCAAAAACATCTTTTTAGATGAAGAATTTGGTGCAAAGATTGGCAATTTTGGGATGGTGGGGTGTGTTGAGAATGACACTGAGGCCCCAAAATTGTATTCAACCAACCCTGCATCTTGGAGTGTGGTTTATTTGGCCCCTGAATATGTGCACCAAGGTATAGTTTCTCCAAGCATTGATATGTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGCCAAACACCCATAAGCAGGTCCAATGAAGTAAGCCTTTTGCTTACTGATAAAATAAAGTCCATTTTGAAGTCAGAAGATGGGAATGAACTAAGGGAGTGGATGGACAGTGCATTAGGTGAAAGTTATTCATTTGATGCAGCTGTGACACTGGCCAATATTGCTAGAGCTTATGTGGAAGAAGATTCTTCTTTGAGACCAAGTGCAGGGGAAGTTATTAAGAAGTTATCGAGATTAGTGGAGGAATTACCAGAAGGGGAGCAACACATGTTGATGTGGTCTCAGAATTTTGTTGATTTGGCTGGGAGTGAGTGGGCATCTCAGAGAAGAAGAAGAGAGAGAAAAATGGGGGATTATCACTTTGTGTACAAGGATCTAGAAGGAGCATCCACTCAATGGGACGATATTCAAAGAAAACTGGGCAATCTGCCGCCAAAGCCACCAGCTTTTAAGCCCCCTCCCTTCACCCCTGCCTCCGATCCTGACACCCTTCCCAAAGACAAAGACTGGCTCGATTCCAAAACCCAAGATGAGCTCGAAGACCTTGAAGATGACCTCGATGATGATCGTTTCCTCCTAGAATACAGGAAGAAGAGGTTAGCTGAGATGCAGGAGGCAGCTAAAGTTTTGAGGTTTGGATCAGTGGTACCCATTTCAGGGTCTGATTTCATTCGAGAGGTTTCACAGGCTCCATCTGATGTTTGGGTGGTTGTCATCCTTTACAAAGAAGGAATTCCTGAATGTGAGCTGTTGTTGCAAAGCATTGAAGAATTGGCTGTAAGATATTCTGCAACAAAATTTGTCAAGATAATATCCACTGATTGCATTCCCAACTACCCAGATCGTAATCTTCCCACTTTATTGGTGTACAATAATGGAGCAGTCAAAGGAAATTATGTGGGTTTGCGTAGTTTTGGGCGAAGATGCACTCCTGAAGGTGTTGCATTAGTCCTGTGCCAATCAGATCCTGTGCTTAATGATGGCCAGAGCAGAGATGCAGAATCGAGAGAAGCTGTCATTGAAGGAGTTCGGAAGAGGTTTATAGAGAAAGTTGTCCTTGATCATGAAGAGAAAGATGATGATTCCTCAAGCGATTAG 1536 0.4323 MEGPQSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWDQRLRICLDVAMALQYMHQVMKPSYVHRNVKSKNIFLDEEFGAKIGNFGMVGCVENDTEAPKLYSTNPASWSVVYLAPEYVHQGIVSPSIDMFAYGVVLLEVLSGQTPISRSNEVSLLLTDKIKSILKSEDGNELREWMDSALGESYSFDAAVTLANIARAYVEEDSSLRPSAGEVIKKLSRLVEELPEGEQHMLMWSQNFVDLAGSEWASQRRRRERKMGDYHFVYKDLEGASTQWDDIQRKLGNLPPKPPAFKPPPFTPASDPDTLPKDKDWLDSKTQDELEDLEDDLDDDRFLLEYRKKRLAEMQEAAKVLRFGSVVPISGSDFIREVSQAPSDVWVVVILYKEGIPECELLLQSIEELAVRYSATKFVKIISTDCIPNYPDRNLPTLLVYNNGAVKGNYVGLRSFGRRCTPEGVALVLCQSDPVLNDGQSRDAESREAVIEGVRKRFIEKVVLDHEEKDDDSSSD. 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02308 511 MobiDBLite consensus disorder prediction 284 316 - -
Seca10g02308 511 ProSiteProfiles Protein kinase domain profile. 1 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02308 511 Gene3D Glutaredoxin 351 481 - -
Seca10g02308 511 Pfam Phosducin 321 447 IPR024253 -
Seca10g02308 511 Pfam Protein kinase domain 5 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02308 511 MobiDBLite consensus disorder prediction 291 306 - -
Seca10g02308 511 PANTHER VIRAL IAP-ASSOCIATED FACTOR HOMOLOG 270 508 - -
Seca10g02308 511 SUPERFAMILY Protein kinase-like (PK-like) 3 234 IPR011009 -
Seca10g02308 511 CDD Phd_like_VIAF 277 467 - -
Seca10g02308 511 SUPERFAMILY Thioredoxin-like 277 466 IPR036249 -
Seca10g02308 511 Gene3D Transferase(Phosphotransferase) domain 1 13 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02308 Seca-Chr10 27641955 27647598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02308 6 226 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 46.781 5.22e-59 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca10g02308 Pkinase 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02308 - - aprc:113867835 418.313