Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02306 ATGCCTCAAACTCTACAGCTCAGAACACCTCGCTCACTCTCAAAACCTACAAAGATGAAGACTTTCTCCTCAATTCAACCACCCCAGCATTTCCCTTGCACCAGATTTTTCTCTTCCACTACCACAAGGACTCAACTCCCTTTTCCTGCAAAGCTCTTCTTTTGCCAGGCAAAATCTGAGACCTTTCATGGTGCTTTTTACTCAGGCATAGATGGGTCATTGAACATAAAAGTGATGCCTTCCACTCTGTTAGCAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGACATTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAGTTGCAGCAAGAACCATCAACAAGTCAGATCTATTTATTGATCACCTTGTTTCAAAGCTTCACTATAAACACAAAACCTGGTACCTTGCAGGGAGAGAGCTTACAACTCTTGAAATTAGGGATGCTCTTATTCCTTATCTTGAATCCCTTTCTGAAGAGCATGGAGACATTCTAGTGGATGTAGTGGAAAACTATCCAAACCCACCTGTTAAGGGAAAATCAGCTGTGGCAATTCCTCCTCCTAGTCCAATGGTAGATTCTAAGAAGCTTAAAGCCACGTCTCGAGTGAATGTGATGGATCCAACTGCTGGCAAGCTTCGCCCTCATATTGTCTATCTCATGGAGCTTGGTATGGATATTGAGCAGATTAGGAGTATTACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAAAACATTGCCACCATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCAGAAAATCTTAAACCCACCATGAAGTTCTTTGAATCTTTGGGTGTTGACAAGAGGCAATGGCCAAAGGTGATTTACCGCTTCCCAGCGCTGCTAACTTATAGCAGACAGAAAGTGCGGGAAAGTGTAGATTTTCTCCATGATTTGGGCCTCTCAGAAGAGAACATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTATTCAGGTGCCCACAAAATTTTGGTCTTAGTATTGAGACCAATCTAAAGCCTGTAACAGAATTTTTCTTGGAGAGGGGATACACTTCAGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGTTTGACTGAGAATTTGATTCCAAAATGGGATTTCTTTATGACTATTGATTATCCAAAATCTGAGCTGGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAACAAAGAATTAAACCAAGGTATGCACGTATGAAAAAATCTGGAGTGAGGTTACTGCTGAACCAGGTTCTTTCACTGTCAGACAGCAACTTTGAGGAGGCCTTGAAAAAGAAAATGAAGAAGATGCAAGCTGATTAG 1497 0.4122 MPQTLQLRTPRSLSKPTKMKTFSSIQPPQHFPCTRFFSSTTTRTQLPFPAKLFFCQAKSETFHGAFYSGIDGSLNIKVMPSTLLAAEKEEAKAVLTLFLKKQGLSNAVAARTINKSDLFIDHLVSKLHYKHKTWYLAGRELTTLEIRDALIPYLESLSEEHGDILVDVVENYPNPPVKGKSAVAIPPPSPMVDSKKLKATSRVNVMDPTAGKLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISLSENLKPTMKFFESLGVDKRQWPKVIYRFPALLTYSRQKVRESVDFLHDLGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIETNLKPVTEFFLERGYTSEEIGTMISRYGALYTFSLTENLIPKWDFFMTIDYPKSELVKFPQFFGYSLEQRIKPRYARMKKSGVRLLLNQVLSLSDSNFEEALKKKMKKMQAD. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02306 498 Gene3D Transcription termination factor 3, mitochondrial 275 494 IPR038538 -
Seca10g02306 498 PANTHER CGI-12 PROTEIN-RELATED 199 489 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 Pfam mTERF 218 398 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 Pfam mTERF 378 485 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 407 438 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 303 333 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 267 298 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 194 226 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 231 262 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 439 470 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 SMART mt_12 371 402 IPR003690 GO:0003690|GO:0006355
Seca10g02306 498 MobiDBLite consensus disorder prediction 1 24 - -
Seca10g02306 498 FunFam Transcription termination factor MTERF5 chloroplastic 274 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02306 Seca-Chr10 27632547 27635528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca10g02306 mTERF 3.5e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02306 K15032 - gmx:100781900 820.076