Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02305 ATGTTTGGTGCTCACCTTCATCAAATTTGGTGCATGATGCTCAAAGCTGGTTCAATGAGATATTTTTACCTCTATCTTCTGGTTCTTTCATGGTTTTTGTTCATCCCAAAAACCCATCAGTTAGAACCAGATCAGACCCAAGCCTTGTTACAGTTAAGGAATTATCTGGAGTACCCTGCCTCGTTGCAAGTTTGGGAAAATTACAATGGAGACTTCTGTGGCCTTTCTTCATCTGCAAATATGAGCATTAAATGTGAGGATAATGCAGTGTCAGAGCTTAAAATTATGGGTGATAAATCTGTGAGGCCATCTTGGTTCAATGGATTTGCAGTTCCCAATCAGACACTATCCGTGAATTTCTCAATTGATTCTTTTTTCACCACATTGACAAGGTTGACCAGCTTAAGGGTTCTCCGTTTGGTTTCCTTAGGGCTTTGGGGGCCACTCCCTGATAAGATTCACCTCTTCTCTTTGCTTGAAGTTTTGGACTTGAGCTCAAATTTCTTATTTGGTGCTATCCCACCAAAAATATCAACTATGGTAAAGCTTCATGCACTAACACTTGATGACAATTATTTTAATACCACTATGCCTAATTGGTTTGATTCATTGTCTAATCTAAATATCTTGAGTTTGAAGAGCAACCGCTTAAAGGGTTCATTCCCCTCCTCACTATGCAAAATTAGGACACTTGAAGTTATTTCCTTGTCCCATAATAAGCTGTCTGGTGAATTGCCTGGTCTTAGTCTTACTTATCTCACTGGCCTACATGTTCTTGATTTAAGAGAAAATCATTTAGAATCTAAACTACCATTGTTGCCCAAATCAGTAGTTACTGTTCTGCTGACCAATAATTCATTCTCAGGAGAGATACCTAAGCAGTTTGGTGAATTAAATCAGCTTCAACATCTAGATCTTTCATCAAATCATCTTAGTAGGATACCCCCATGTACCTTGTTCTCTTTGCCAAACATAAGATATTTGAATCTAGCAAAAAATGTCCTAAGTGGGTCCCTTCCAGACAAACTTAGCTGTGGCAGCAAACTTGGTTATGTGGATATTTCTAGTAACAAGTTACGTGGTGGACTTCCATCTTGCTTGGCCAATACTTCTGATAGTAGAGTTGTCAGATATGGTAGAAACTGTTTATCTGTTCATTCTCAGCCTCAGCAGAGAGGGTCTTATTGTAAAGAATCCAATTCAGGATGGATGAAATTCAAGGCATGGAAAGTAGCTGTAGCAGTGGCCATCATTGTTGGACTTGCTCTTGTGATTTTGGTGTCTGGAGTTTTCTTATGTAAAAGATATCATTTGAGAAAGACAACTAGGCAGGATGTGTTGCTAAAGATTGTCCAAGATAACTCAACAACTGGGGTTTCATCTGAAATCCTTGCAAATGCCAGATTCATTTCTCAAACAGTGAAGCTAGGGGCACAAACTACTCCAACCTGTCGACAATTTTCAGTAGAAGAGTTGAAGGAAGCCACAAGAAACTTTGATTTGTCAAGTTATATTGGTGAAGGCTCCATAGGGAAGCTGTACAAAGGTAAACTAGAGAGTGGATCTTATGTGGTGATACGATCTTTGGCTCTATCAAAGAAATGCTCAATTCAAAATCTTAAAGCTAGGTTGGATTTACTGTCAAAGCTTCAACACCCAAATTTGGTTAGTCTTTTGGGTCATTGCATTGATGTTGGTGGACAAGATGACTACAGCAACCACAAACTTCATCTTATATATGAGTATGTGCCAAATGGGAATTATCATACCCATCTATCAGAATTTTCTACAGAGAAGGCACTTAAATGGTCTGATAGATTGACAATTTTAATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCTGGCTGTTTTAATAACCAACTAAGGACAAATAATATATTACTTGATGAACACCGCATTCCAAAACTGAGTGACTATGGTATGTCCATCATCACAGAAGAAATTGAAAAGTTTGAGGCAAAGGGTGAGAAGCCAAAATCATGTCAAAAGACAAAAATGGATAACGATGTTTATAATTTTGGATTCATATTGTTTGAATCACTTGTTGGACCTATAGCATGCGACAAAGGTGAAACATTTTTTCTAAATGAAAAGGCATCCTTTGGCAGTCAAGATGGTAGAAGAAAGATTGTGGACCCAGTAGTGTTGACTACTTCTTCTCAAGAGTCATTATCAATTGCAATATCAATAACAACCAAATGCATATCTCCAGAATCTTCATCCCGCCCATCTTTTGAGGATGTTCTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGATCAGAAATCAGATTGA 2346 0.3832 MFGAHLHQIWCMMLKAGSMRYFYLYLLVLSWFLFIPKTHQLEPDQTQALLQLRNYLEYPASLQVWENYNGDFCGLSSSANMSIKCEDNAVSELKIMGDKSVRPSWFNGFAVPNQTLSVNFSIDSFFTTLTRLTSLRVLRLVSLGLWGPLPDKIHLFSLLEVLDLSSNFLFGAIPPKISTMVKLHALTLDDNYFNTTMPNWFDSLSNLNILSLKSNRLKGSFPSSLCKIRTLEVISLSHNKLSGELPGLSLTYLTGLHVLDLRENHLESKLPLLPKSVVTVLLTNNSFSGEIPKQFGELNQLQHLDLSSNHLSRIPPCTLFSLPNIRYLNLAKNVLSGSLPDKLSCGSKLGYVDISSNKLRGGLPSCLANTSDSRVVRYGRNCLSVHSQPQQRGSYCKESNSGWMKFKAWKVAVAVAIIVGLALVILVSGVFLCKRYHLRKTTRQDVLLKIVQDNSTTGVSSEILANARFISQTVKLGAQTTPTCRQFSVEELKEATRNFDLSSYIGEGSIGKLYKGKLESGSYVVIRSLALSKKCSIQNLKARLDLLSKLQHPNLVSLLGHCIDVGGQDDYSNHKLHLIYEYVPNGNYHTHLSEFSTEKALKWSDRLTILIGVAKAVHFLHTGVIPGCFNNQLRTNNILLDEHRIPKLSDYGMSIITEEIEKFEAKGEKPKSCQKTKMDNDVYNFGFILFESLVGPIACDKGETFFLNEKASFGSQDGRRKIVDPVVLTTSSQESLSIAISITTKCISPESSSRPSFEDVLWNLQYAAQVQATADADQKSD. 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02305 781 ProSiteProfiles Protein kinase domain profile. 499 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02305 781 SUPERFAMILY L domain-like 129 383 - -
Seca10g02305 781 SUPERFAMILY Protein kinase-like (PK-like) 480 764 IPR011009 -
Seca10g02305 781 ProSiteProfiles Leucine-rich repeat profile. 300 321 IPR001611 GO:0005515
Seca10g02305 781 Gene3D Transferase(Phosphotransferase) domain 1 583 781 - -
Seca10g02305 781 Gene3D Ribonuclease Inhibitor 42 276 IPR032675 -
Seca10g02305 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 42 275 - -
Seca10g02305 781 PANTHER UNNAMED PRODUCT 127 696 - -
Seca10g02305 781 SMART LRR_typ_2 156 180 IPR003591 -
Seca10g02305 781 SMART LRR_typ_2 204 228 IPR003591 -
Seca10g02305 781 SMART LRR_typ_2 253 276 IPR003591 -
Seca10g02305 781 SMART LRR_typ_2 298 321 IPR003591 -
Seca10g02305 781 SMART LRR_typ_2 322 346 IPR003591 -
Seca10g02305 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 277 401 - -
Seca10g02305 781 Pfam Protein tyrosine and serine/threonine kinase 501 761 IPR001245 GO:0004672|GO:0006468
Seca10g02305 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 462 582 - -
Seca10g02305 781 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 583 781 - -
Seca10g02305 781 Pfam Leucine rich repeat 278 335 IPR001611 GO:0005515
Seca10g02305 781 Pfam Leucine rich repeat 182 241 IPR001611 GO:0005515
Seca10g02305 781 Gene3D Ribonuclease Inhibitor 277 402 IPR032675 -
Seca10g02305 781 Gene3D Phosphorylase Kinase; domain 1 460 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02305 Seca-Chr10 27610572 27615576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02305 24 709 Miscellaneous Gene Families AT5G14210 56.609 0.0 770
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca10g02305 PK_Tyr_Ser-Thr 5.1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02305 - - gmx:100799183 1217.99