Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02302 ATGATGACTAAGCTCAACCTGAGAGCATTGGTCTTTTCCCTCTTGCTGTTTGTCCCCTCATTGGGAAAAGACCTGCTGAGCTGTGAAACAACAACCCCAGATGCTTCTGGCTACCCTTGCTATGAATATGAATCACAGAGGCAGTGTGAAACATTTGCACTCATTCACACAAACTCATATTACTCTTCTCTCTTCAATTTGACCTTTTACTTGGGAGTCAACCGTTTCCTAATAGCAGAAGCAAATAGGTTCTCTGCTGAAAATGAGTTCTTCTCCCAGGACCAACCTCTTTTGATACCAATTGATTGCAAATGCAAAAGTGGCATCTTTCATGCAGCATTAACCAAAACTTGTATCAAAGGGGAGAGCTTTTATGGTATTGCTCAATCACTAGAGGGCTTGACAACATGTAAGGCTATCCAAGACAAGAACCCGGGTGTGTCACCATGGAATCTTGATGATAAAGTCAGATTGATTATCCCATTGAGATGTGCCTGCCCAGTTTTATCAAGAGTTAGCCTAGAGCCAAGACTTCTGCTTTCTTATCCAGTAAGAAAAGGTGATACAATTTCTAATTTGGCTTCAAAGTTCAATATCCCAATAGAAGCTATTATTTCTGCAAATCACATATCATCTGAAAGCTTTAGACCTGAAAATCTGACACCCTTTACCTCTCTTTTGATTCCACTCAATGGGGAGCCTATTCTTGGTTCTATGGCTAAACCCTTGGAACACAATTCAGGTTCTCCACCACCCAGCATACCAGTGATAAGTTCACACAAGAAGTCAAATATGTGGACTGAATTATATATTGGGCTAGCTGGGGTTGCATTTGGATTCTGCATTGCTTTTGTAGCAGTTTTCTTTTTTGTCAGACTGAAGAACAAAAAGAATGAAGAGAATTCATGTAAGGGAAATGATGTGGAGCTACAACATCTCAACTTTAGCATAAGAACAGCCAGTAGCAGCAAAGTTTCATTTGAGGGGTCTCAGTACACACATGATAGAAAAATTATTGATACCACAGCACATAAGAAGTTGCTGGAATCATACACCATTGAAGAGATGAGGAAAGCAACTGATAACTTCAATTCCAGCAATCACATTGAGGGGTCTATGTATCATGGTCATCTAAATGGGAAAAGCATGGCAATAAAACATACAAAGACAGAGACAGTGTCAAAGATTGATTTTGGCCTTTTCCATGATGTTGCTCACCACCACCCCAACATAATTAGACTGCTGGGAACTTGTTTGATGGAGGGTCCACAATCATATTTGGTCTTTGAGTATGCCAAAAATGGATCTTTGAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTTATTGCTTCCTGCTATTGTTTCTTGACATGGGACCAAAGGCTCAGGATCTGCCTTGATGTGGCCATGGCTTTGCAGTATATGCACCAGATTATGAAACCAAGCTATGTGCATAGAAATGTAAAGAGCAAAAACATATTTTTAGATGAAGAATTTGGTGCAAAGATTGGAAATTTTGGGATAGTGGGGTGTGTTGAGAATGACACTGAGGACCCAAAACTGTATTCAACCAACCCTGAATCTTGGAGTGTGGTTTATTTGGCCCCTGAATATGTGCACCAAGGTATAGTTTCTCCAAGCATTGATATGTTTGCATATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGCCAAACACCTATAAGCATGTCCAATGAAGGAAACCTTTTGCTTACAGATAAAATAAAGTCCATTTTGAAGTCAGAAGATGGGAATGAACTAAGGGAGTGGATGGACAGTGCATTAGGTGAAAGTTATTCATTTGATGCAGCTGTGACATTGGCCAATATTGCTAGAGCTTGTGTGGAAGAAGATTCTTCTTTGAGACCAAGTGCAGGGGAAGTTATTGAGAAGTTATCGAGATTGGTGGAGGAATTACCAGAAGGGGAGCAACACATTTTGATGTGTGAAAGCTCATGTGAACCTCTAGTGATGTAA 2004 0.4042 MMTKLNLRALVFSLLLFVPSLGKDLLSCETTTPDASGYPCYEYESQRQCETFALIHTNSYYSSLFNLTFYLGVNRFLIAEANRFSAENEFFSQDQPLLIPIDCKCKSGIFHAALTKTCIKGESFYGIAQSLEGLTTCKAIQDKNPGVSPWNLDDKVRLIIPLRCACPVLSRVSLEPRLLLSYPVRKGDTISNLASKFNIPIEAIISANHISSESFRPENLTPFTSLLIPLNGEPILGSMAKPLEHNSGSPPPSIPVISSHKKSNMWTELYIGLAGVAFGFCIAFVAVFFFVRLKNKKNEENSCKGNDVELQHLNFSIRTASSSKVSFEGSQYTHDRKIIDTTAHKKLLESYTIEEMRKATDNFNSSNHIEGSMYHGHLNGKSMAIKHTKTETVSKIDFGLFHDVAHHHPNIIRLLGTCLMEGPQSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWDQRLRICLDVAMALQYMHQIMKPSYVHRNVKSKNIFLDEEFGAKIGNFGIVGCVENDTEDPKLYSTNPESWSVVYLAPEYVHQGIVSPSIDMFAYGVVLLEVLSGQTPISMSNEGNLLLTDKIKSILKSEDGNELREWMDSALGESYSFDAAVTLANIARACVEEDSSLRPSAGEVIEKLSRLVEELPEGEQHILMCESSCEPLVM. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02302 667 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 21 648 - -
Seca10g02302 667 ProSiteProfiles Protein kinase domain profile. 342 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02302 667 Pfam Protein kinase domain 378 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02302 667 Gene3D LysM domain 180 229 IPR036779 -
Seca10g02302 667 SMART LysM_2 181 229 IPR018392 -
Seca10g02302 667 Pfam LysM domain 182 229 IPR018392 -
Seca10g02302 667 SUPERFAMILY LysM domain 181 216 IPR036779 -
Seca10g02302 667 Gene3D Transferase(Phosphotransferase) domain 1 432 657 - -
Seca10g02302 667 Gene3D Phosphorylase Kinase; domain 1 334 431 - -
Seca10g02302 667 SUPERFAMILY Protein kinase-like (PK-like) 345 641 IPR011009 -
Seca10g02302 667 ProSiteProfiles LysM domain profile. 180 228 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02302 Seca-Chr10 27569121 27571124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02302 37 666 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.000 1.32e-149 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca10g02302 Pkinase 7.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02302 - - gmx:100816082 984.941