Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02278 ATGGGGGATGAATCTAAGGAAAGCTGCACATCAATCAATAATGACAACATGGAAGAAGAAGAAGAAGAAGTTGAAGTTGAAGAAAGAGATCCAGAAAGAAATCCATTGAATGAGCCATTGCTGAAGAGGAATAGGACACTATCTTCCAATCCACTAGCCCTGGTTGGAGCAAAAGTTTCTTACATAGAAAGCTTGGATTATGAGATCAATGAGAATGATCTATTCAAACAAGATTGGAGGAGCAGATCAAGAGCTCAAGTTTTGCAATACATATTCTTGAAATGGTCACTTGCTTTCCTTGTTGGACTTCTCACTGGTATTATAGCAACTCTCATCAATCTTGCTGTAGAGAACATTGCAGGGTACAAACTACTTGCTGTTGTTGAATACATCCAACAAGAAAGGTACTTGATGGGTTTCCTATATTTCACAGGAACTAATTTCCTTTTGACATTTGTTGCTGCTGTTCTGTGTGTGTTTTTTGCACCCACAGCTGCTGGACCTGGAATACCTGAAATTAAAGCTTATCTGAATGGTGTTGATACTCCCAACATGTATGGTGCTACAACATTGTTTGTTAAGATAATTGGAAGCATTGGAGCTGTGTCTGCAGGCCTAGATTTAGGAAAAGAAGGGCCATTGGTACACATTGGAAGTTGCATTGCTTCGTTACTAGGCCAAGGAGGTCCTGATAATTACAGGATCAAATGGAGGTGGTTGAGATATTTCAACAATGATCGTGACCGTCGTGATCTCATTACCTGTGGTGCTTCTTCAGGGGTTTGTGCAGCTTTCAGGGCCCCTGTGGGTGGAGTTCTCTTTGCTCTTGAAGAGGTGGCAAGTTGGTGGAGAAGTGCACTCCTTTGGAGAACTTTTTGTAGCACTGCTGTGGTGGTTGTTGTGTTAAGGGCCTTCATTGAACTCTGCAATGAAGGCAAATGTGGTCTTTTTGGTGAAGGAGGTTTGATCATGTTTGATGTCAGCAATGTCACTGTCAGGTATAATGTCATGGATATCATCCCTGTTGCCATCATTGGAGTCATTGGTGGTGTTCTTGGAAGCCTCTATAATTACCTTCTTCACAAGGTCCTCCGTCTCTACAATCTCATCAATCAGAAAGGAAAAATGTATAAGCTCCTCCTCAGTCTTGCAGTAGCACTCTTCACATCATTATGCCAATATGGTCTCCCTTTCTTAGTAAAATGCACCCCTTGTGATCCCTCCCTTCCAGATTCTGTGTGCCCCACTAATGGCAGGTCTGGAAATTACAAACAATTCAACTGCCCAAATGGCTACTACAATGATCTTGCTACTCTGTTGCTAACAACCAATGATGATGCTGTTAGAAACATATTCTCAACCAACACTCCTCATGAATTCCAACCCACCTCCATCCTTATTTTCTTTGGACTCTATTGCATATTAGGACTAATTACCTTTGGAATTGCTGTGCCATCTGGTCTCTTCCTTCCAATCATTCTCATGGGTTCAGGTTATGGCCGCCTCCTTGGCATCATTATGGGACCTCATACAAACATTGATCATGGCTTGTTTGCTGTTCTTGGTGCAGCCTCACTCATGGCTGGATCTATGAGGATGACTGTATCCCTTTGTGTCATCTTCCTTGAACTAACCAACAACCTTTTATTACTACCAATAACAATGATTGTTCTCCTCATAGCCAAAACTGTTGGAGATAGTTTCAACCCAAGTATCTATGAGATCATATTGCACTTAAAAGGCCTTCCTTTCATGGATGCAGACCCTGAGCCATGGATGAGAAATCTCTCAGTTGGAGAGCTTGTTGATGTAAAGCCATCAGTTGTTAGCTTCCGTGGGGTAGAAAAGGTGGCTAACATAGTCAATGCTTTGAGAAACACTACACATAATGGTTTCCCTGTCATGGATGATGGGGCAGTGCATCCAACAGGAATGGCTAATGAGGTGACACAATTGCATGGACTAATTCTAAGAGCAAACCTAATCCAAGTGCTAAAGAAGAAGTGGTTCTTGAAAGAGAGAAGGAGAACTGAGGAATGGGAAGTGAGAGAGAAATTTACTTGGGTAGAGCTGGCTGAGAGAGAGGGGAATATTGAAGATGTGGCTGTGACAAAAGAAGAAATGGAGATGTTTGTTGATCTAATCCCTCTTACCAATACAACTCCTTTTACAGTGCTAGAAAGCATGTCAGTAGCAAAAGCAAGGCTTCTCTTCAGACATGTAGGACTTCGCCATTTGCTTGTTGTATCCAAGTATCAAGCATCTGGGGTATCTCCTGTAATTGGGATCTTGACTAGGCAGGACCTACTGGCCTACAACATTTTGACAGTCTTTCCTCACCTGGAAAAATCTAAGGGAAGAGAAAAGAGGAACTGA 2376 0.4217 MGDESKESCTSINNDNMEEEEEEVEVEERDPERNPLNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRAQVLQYIFLKWSLAFLVGLLTGIIATLINLAVENIAGYKLLAVVEYIQQERYLMGFLYFTGTNFLLTFVAAVLCVFFAPTAAGPGIPEIKAYLNGVDTPNMYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVASWWRSALLWRTFCSTAVVVVVLRAFIELCNEGKCGLFGEGGLIMFDVSNVTVRYNVMDIIPVAIIGVIGGVLGSLYNYLLHKVLRLYNLINQKGKMYKLLLSLAVALFTSLCQYGLPFLVKCTPCDPSLPDSVCPTNGRSGNYKQFNCPNGYYNDLATLLLTTNDDAVRNIFSTNTPHEFQPTSILIFFGLYCILGLITFGIAVPSGLFLPIILMGSGYGRLLGIIMGPHTNIDHGLFAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDADPEPWMRNLSVGELVDVKPSVVSFRGVEKVANIVNALRNTTHNGFPVMDDGAVHPTGMANEVTQLHGLILRANLIQVLKKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLIPLTNTTPFTVLESMSVAKARLLFRHVGLRHLLVVSKYQASGVSPVIGILTRQDLLAYNILTVFPHLEKSKGREKRN. 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02278 791 CDD CBS_pair_voltage-gated_CLC_euk_bac 605 772 - -
Seca10g02278 791 Pfam Voltage gated chloride channel 151 565 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 FunFam Chloride channel ClC3 86 404 - -
Seca10g02278 791 Gene3D Clc chloride channel 86 587 - -
Seca10g02278 791 SUPERFAMILY CBS-domain pair 590 772 IPR046342 -
Seca10g02278 791 MobiDBLite consensus disorder prediction 14 28 - -
Seca10g02278 791 ProSiteProfiles CBS domain profile. 718 782 IPR000644 -
Seca10g02278 791 MobiDBLite consensus disorder prediction 1 41 - -
Seca10g02278 791 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 PRINTS Chloride channel signature 163 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 PRINTS Chloride channel signature 534 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 PRINTS Chloride channel signature 484 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 PRINTS Chloride channel signature 516 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 PRINTS Chloride channel signature 572 586 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca10g02278 791 Pfam CBS domain 720 772 IPR000644 -
Seca10g02278 791 Gene3D - 590 777 IPR046342 -
Seca10g02278 791 CDD ClC_6_like 63 585 - -
Seca10g02278 791 PRINTS Plant CLC chloride channel signature 311 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g02278 791 PRINTS Plant CLC chloride channel signature 68 76 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g02278 791 PRINTS Plant CLC chloride channel signature 279 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g02278 791 PRINTS Plant CLC chloride channel signature 293 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g02278 791 PRINTS Plant CLC chloride channel signature 436 452 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca10g02278 791 SMART cbs_1 607 666 IPR000644 -
Seca10g02278 791 SMART cbs_1 721 774 IPR000644 -
Seca10g02278 791 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 19 776 - -
Seca10g02278 791 SUPERFAMILY Clc chloride channel 72 587 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02278 Seca-Chr10 26470249 26475864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02278 27 786 Ion Channels AT3G27170 78.947 0.0 1229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02278 K05016 - gmx:778094 1368.99