Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02270 ATGTCTTATAAGAAACTTGGGGTGACAAGATTAAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAGGACATAGAAAAATTCAATTCTAGCTGTCAGGTTCTTCTGTTTTCTGCTACATTCAATGAGACTGTCAAGAATTTTGCTTCAAGGACAGTTAAGAAGGATCATAATAAACTATTTGTAAAGAAAGAAGAATTATCTTTAGATGCTGTGAAGCAATATAAAGTGCATTGTCCAGATGAACTCTCTAAGATTGAAGTAATAAAAGATTACATACTTGAAATGGGAGAGAATGTGGGGCAAAGTATTATATTTGTACGGACAAGAAATAGTGCAAGAATGTTGCATAAATCCCTTGTTGATTTGGGCTACGAGGTTTCTTCCATACAAGGTGCTCTTGACAATGAAATGAGAGACAAGATTGTCAAGGAGTTCAGAGATGGTTTGACTCAGGTTCTTATATCAACTGATGTTCTTGCCCGGGGCTTTGATCAGCAACAGGTTAATTTGGTTATCAACTATGATCTTCCGGTGAAATACACTGCTGGGTATAACCCTGATCCTGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGAGCTGGGCGTTTCGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGACAAAAGGGATGAAAAGCTCTTGTCAAAGATTGTGAACCATTTTGGCACTCATGTATCCGAGGTGCGTGAAAATAGTGTTGAAGACTATAAAGCTGCTCTTAAGGAAGCTGGTTTACTGCAATAA 819 0.3846 MSYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKDIEKFNSSCQVLLFSATFNETVKNFASRTVKKDHNKLFVKKEELSLDAVKQYKVHCPDELSKIEVIKDYILEMGENVGQSIIFVRTRNSARMLHKSLVDLGYEVSSIQGALDNEMRDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKYTAGYNPDPEPDYEVYLHRVGRAGRFGRKGAVFNLICDKRDEKLLSKIVNHFGTHVSEVRENSVEDYKAALKEAGLLQ. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02270 272 Gene3D - 85 265 IPR027417 -
Seca10g02270 272 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 73 IPR014001 -
Seca10g02270 272 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 5 243 - -
Seca10g02270 272 SMART helicmild6 128 221 IPR001650 -
Seca10g02270 272 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 102 262 IPR001650 -
Seca10g02270 272 Pfam Helicase conserved C-terminal domain 99 221 IPR001650 -
Seca10g02270 272 CDD SF2_C_DEAD 86 230 - -
Seca10g02270 272 Pfam DEAD/DEAH box helicase 4 61 IPR011545 GO:0003676|GO:0005524
Seca10g02270 272 Gene3D - 1 84 IPR027417 -
Seca10g02270 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 237 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02270 Seca-Chr10 26367047 26371467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02270 11 256 Eukaryotic Initiation Factors Gene Family AT1G72730 38.400 2.85e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02270 K18655 - gmx:100778091 435.261