Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02268 ATGCAATGTGTAAACTCAAATTTTACTCATTTGATCAATTTCCTCTTTTATCGGTTCCCTGTCAATTTTTCTGTGGCTGTTGCTGTGTTGCTTAATATTTTGGTTCCACTTTACTCCCTTAGCCAAGCTTTTGAGCAAGCAAAGAGGTCCCCAGGATGTATTTTTGGCACATCAGGAGATATTGACATTGGGAAGATTCAGAATTTGAAGTATTTTCAAGCTCTTCTCCAGCAATCTAATGAAAAGGATTTGCATCAATTGGTTGATCAACTGGGGAAGCAAGACAAAGCAGGCATCACAGCATCAAAGGAAATGGTGCAAGCAAAGTTAACATCCATGTGTGGAAAAAACAGCTTGAGGACTAGTAGTAATGGTTCCAAGAGTTTATTCAACTTGAAAAACAACAGCTCTGAGGACTGCATGATTGTTGAAAGGCCTCAATCATATGCCAACCATACAAAGGGTCCTGGTGTCTCTTCATTCTTGGAAATTGAAGGAGAAGAAAGAGCTTCTGGAAACATTTTTTTGGCAAAACGTGTACACATGGAAAATAATAGCCCCAGAGTTGGTTATGTGAAGTCACCTTCAAGCAAGGAGGAAGTTAATTCCGATGTTTGTGGCAATGGGTTTGTTACTGCAAGAGCAAAATTGGAAATGGAAGTGAAGCAAAGGCGAGGAGCAGTTGGTTCACCTAGTGCATCTGTCTCACCACAGTGTGATAACAATCCTTCCAATAGGTTATATGGTGGGAGATCATATGGCGTTTCACGACGTGGCTTCCGTGGTAATTTTGTTCCCCCTATTAAATCCAATGGGAACAATAATGGAAATTCGAGTTCACGAATTGCTGGAAAGTGTGATGATTCTTTAGATGACTCTACAAAGAGATGTTTGGAAATGTTGTGTGGTCCTGATGGTGAGCTTCCTGAGAAATTGAGAAATTTGGAACCTCGCCTCATTGAACACGTTAGTAACGAGATTATGGATAAAGATCCCAATGTTCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTGTTACTGAGATGGTCATATGGCCTCTGCTACGTCCTGACATATTTAAAGGCTGCCATTCTCCTGGGCGAGGTCTGCTTCTGTTTGGTCCACCAGGAACTGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCAAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTAACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTAAGAGCCCTTTTTGGAGTTGCCAGTTGTCGTCAGCCAGCCGTAATTTTTGTTGATGAAATAGATTCGCTACTCTCTCAGCGTAAGTCAGATGGTGAGCATGAATCAAGTAGACGGCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTACTTATAGGGGCAACAAATCGTCCCCAAGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGACTCTATATTCCCCTACCATCCTCAGAGGCAAGAGCTTGGATTATACGTAACCTTTTGGAGAAGGATGGATTATTCAAGCTGTCAAATGAGGAAATGGATACCATATGCAACTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAAGATGCTTCTATGGGTCCCCTAAGAGAGGCCTTAAGACAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGACATGCGACCAGTAACTCTTCAGGACTTCGAGAATGCCCTGCAAGAAGTTAGGCCTTCTGTTTCCCCAAATGAACTTGGCACTTATGATCAATGGAACAAGCAGTTTGGAAGCCTGTCACTGTAG 1845 0.4201 MQCVNSNFTHLINFLFYRFPVNFSVAVAVLLNILVPLYSLSQAFEQAKRSPGCIFGTSGDIDIGKIQNLKYFQALLQQSNEKDLHQLVDQLGKQDKAGITASKEMVQAKLTSMCGKNSLRTSSNGSKSLFNLKNNSSEDCMIVERPQSYANHTKGPGVSSFLEIEGEERASGNIFLAKRVHMENNSPRVGYVKSPSSKEEVNSDVCGNGFVTARAKLEMEVKQRRGAVGSPSASVSPQCDNNPSNRLYGGRSYGVSRRGFRGNFVPPIKSNGNNNGNSSSRIAGKCDDSLDDSTKRCLEMLCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCHSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIIRNLLEKDGLFKLSNEEMDTICNLTEGYSGSDMKNLVKDASMGPLREALRQGIEITKLKKEDMRPVTLQDFENALQEVRPSVSPNELGTYDQWNKQFGSLSL. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02268 614 MobiDBLite consensus disorder prediction 225 248 - -
Seca10g02268 614 FunFam Fidgetin-like 1 332 514 - -
Seca10g02268 614 Gene3D - 332 606 IPR027417 -
Seca10g02268 614 FunFam Fidgetin like 1 504 590 - -
Seca10g02268 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 609 IPR027417 -
Seca10g02268 614 Pfam Vps4 C terminal oligomerisation domain 576 610 IPR015415 -
Seca10g02268 614 MobiDBLite consensus disorder prediction 229 248 - -
Seca10g02268 614 PANTHER AAA DOMAIN-CONTAINING 203 611 - -
Seca10g02268 614 ProSitePatterns AAA-protein family signature. 475 494 IPR003960 GO:0005524|GO:0016887
Seca10g02268 614 SMART AAA_5 369 505 IPR003593 GO:0016887
Seca10g02268 614 MobiDBLite consensus disorder prediction 264 283 - -
Seca10g02268 614 MobiDBLite consensus disorder prediction 267 283 - -
Seca10g02268 614 Pfam ATPase family associated with various cellular activities (AAA) 373 503 IPR003959 GO:0005524|GO:0016887
Seca10g02268 614 Gene3D - 504 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02268 Seca-Chr10 26350131 26356459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02268 288 612 Calmodulin-binding Proteins AT3G56690 30.539 1.39e-42 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02268 K22766 - gmx:100776024 970.689