Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02245 ATGAAGCGAAAACTGCCACCTAAATCCACTCCATCCAAAGAAGAACCCCCTCTCAAGCAACAACCTCAATTCCAATTGGAAACAGAGTATGAAGAAATCGTAGAATATGTAGAAGAAGAAGAGGAGGAGGTAGAACAAGGAGAAGACGATGATCAAGGCAACGATCAGACGGCCAAGGTGCCCTCCACGTCATCACCCGCGCTGGAGGAAAACGACGAAGACGACGAGCCCATCCAGAAACTTCTAGAACCTTTCGGGAAGGACGAGATCACAAAGCTTCTGTGCGAGGCGGCGATCAAACACCGCGACGTGGCGGGGCGCATCCGTAAAGCGGCGGACGCAGACCCCGCCCACCGGAAAATCTTCGTGCACGGCCTCGGCTGGGACACCACCACCGAAACCCTAACCACCGCGTTCCGCCAATACGGCGAGATCGAGGATTGCAAGGCCGTCTCTGACAAGGTCACCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGTCCCGCCGCGCCGCTCGCCTCGCCCTCCGCGAGCCGCAGAAGAAGATCGGCAATCGCATGACCGCATGCCAGCTGGCATACCTTGGTCCCGTCCATGGCAACAACGCTAGCGCCTCCACTGCGGCTGCAACTCCGGGGGCTTCAGAGTACACGCAAAGGAAGATCTATGTGAGTAATGTGGGTGCCGATTTGGACCCGCGGAGGCTTCTGGCATTCTTCTCGCAGTTTGGGGAGATTGAGGAAGGGCCGTTAGGGCTTGACAAAGTGACTGGAAAACTTAAAGGGTTCTGTTTATTAGTGTACAAGAGTGTGGAGGGTGCGAAGAAGGCTTTGGAGCAGCCTCACAAGGAGTTCGAGGGTCACATATTGCATTGCCAGAAAGCAATTGATGGTCCCAAACAACAGCGTTTTCCATTGCAGCATCAGAATAATGCTCACACTGCAGCGGTGACAGGGTCATCATTTCAGAGGAATGAGAATGCTGCCTTTGTTGGTGGACTTGCTGCCACCACAGTGCCGGGGCATTTGGTGGCACCAGCTGTGCCGGCCATTGGGTTTAACCAGGGAGGAGCTGCTGCGGCTGCACAGACACTGAATCCGGCTCTTGGGCAGGCGCTGACGGCGCTGCTTGCATCTCAGGGTGCTGGATTAGGGCTGAGTGGCTTGTTGGGGACGCTAGGATCGCCAGCAGCTGTGAACAATGCTGGTCATGGATTGCAGGGTGGTTATAGTAGCCAGGCAAATGTGAATCCAGCGGGTATTGCAGGGTATGGGAATCAAGTAGGATTGCAGGTTGCATATCCAAACCAGCAGCAGGTGGGGCAAGGTGGCTCTGGAAGAGGGCAGCAACAGCAGCAGCAGCATGGTGTTGGGCAATATGGTGGTGTTGCCCCTTACATGAGCCATTAG 1413 0.5534 MKRKLPPKSTPSKEEPPLKQQPQFQLETEYEEIVEYVEEEEEEVEQGEDDDQGNDQTAKVPSTSSPALEENDEDDEPIQKLLEPFGKDEITKLLCEAAIKHRDVAGRIRKAADADPAHRKIFVHGLGWDTTTETLTTAFRQYGEIEDCKAVSDKVTGKSKGYGFILFKSRRAARLALREPQKKIGNRMTACQLAYLGPVHGNNASASTAAATPGASEYTQRKIYVSNVGADLDPRRLLAFFSQFGEIEEGPLGLDKVTGKLKGFCLLVYKSVEGAKKALEQPHKEFEGHILHCQKAIDGPKQQRFPLQHQNNAHTAAVTGSSFQRNENAAFVGGLAATTVPGHLVAPAVPAIGFNQGGAAAAAQTLNPALGQALTALLASQGAGLGLSGLLGTLGSPAAVNNAGHGLQGGYSSQANVNPAGIAGYGNQVGLQVAYPNQQQVGQGGSGRGQQQQQQHGVGQYGGVAPYMSH. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02245 470 PANTHER GEO13361P1-RELATED 207 460 - -
Seca10g02245 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 211 IPR000504 GO:0003723
Seca10g02245 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 312 IPR000504 GO:0003723
Seca10g02245 470 MobiDBLite consensus disorder prediction 31 51 - -
Seca10g02245 470 SUPERFAMILY RNA-binding domain, RBD 111 199 IPR035979 GO:0003676
Seca10g02245 470 Gene3D - 23 197 IPR012677 -
Seca10g02245 470 MobiDBLite consensus disorder prediction 439 459 - -
Seca10g02245 470 MobiDBLite consensus disorder prediction 1 75 - -
Seca10g02245 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 291 IPR000504 GO:0003723
Seca10g02245 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 187 IPR000504 GO:0003723
Seca10g02245 470 MobiDBLite consensus disorder prediction 439 463 - -
Seca10g02245 470 SMART rrm1_1 222 294 IPR000504 GO:0003723
Seca10g02245 470 SMART rrm1_1 120 192 IPR000504 GO:0003723
Seca10g02245 470 Gene3D - 198 315 IPR012677 -
Seca10g02245 470 SUPERFAMILY RNA-binding domain, RBD 211 307 IPR035979 GO:0003676
Seca10g02245 470 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02245 Seca-Chr10 26094810 26096222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02245 220 300 C2H2 Transcription Factor Family AT2G19380 37.037 1.40e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02245 K12741 - qsu:112025393 471.855