Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02233 ATGGATCATTACAAGGTTCTAGGTTTGCACAGAACCGCGACCAAGGAAGAAATTAAAGCAGCGTTCAAGAAATTGGCGTTTCAGTTTCACCCTGACAAGCATTCCCAATCGCCCAAGGCCGTAAGGGACAACGCTACCCTTCGATTCAAGCAGGTCTCAGAGGCTTATGAGGTCCTCATGGACGATAGCAAGCGCGCCGACTACAACTACCGGTGGCGTTCCGGCTCCGGCGGCCGAAGCGCCGGTGCTGGCGGCAACAACTATTATTCTCAGTATAGTTATGGTTATGGATATGGTAGTAATGGAAACAATTACGATTATAAATCTAGGTCTGGGTTCAGTGCTGGTGGCTTGGCGTCCAAGTTTGAAGTCGCTCTTCGGATTTTGATGGCGCGATCATCTCTTCTCAATCTTAGCTTTGCAGCGAGCTATATTAGGTGGGATTATTGTGATTGA 456 0.4846 MDHYKVLGLHRTATKEEIKAAFKKLAFQFHPDKHSQSPKAVRDNATLRFKQVSEAYEVLMDDSKRADYNYRWRSGSGGRSAGAGGNNYYSQYSYGYGYGSNGNNYDYKSRSGFSAGGLASKFEVALRILMARSSLLNLSFAASYIRWDYCD. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02233 151 PANTHER CO-CHAPERONE PROTEIN DJLA 4 103 - -
Seca10g02233 151 SMART dnaj_3 1 64 IPR001623 -
Seca10g02233 151 Pfam DnaJ domain 2 69 IPR001623 -
Seca10g02233 151 CDD DnaJ 2 61 IPR001623 -
Seca10g02233 151 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Seca10g02233 151 PRINTS DnaJ domain signature 4 22 IPR001623 -
Seca10g02233 151 PRINTS DnaJ domain signature 64 83 IPR001623 -
Seca10g02233 151 PRINTS DnaJ domain signature 22 37 IPR001623 -
Seca10g02233 151 PRINTS DnaJ domain signature 44 64 IPR001623 -
Seca10g02233 151 FunFam DnaJ domain protein 1 90 - -
Seca10g02233 151 SUPERFAMILY Chaperone J-domain 1 98 IPR036869 -
Seca10g02233 151 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Seca10g02233 151 Gene3D DnaJ domain 1 125 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02233 Seca-Chr10 25963914 25968037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02233 3 69 C2H2 Transcription Factor Family AT1G74250 38.806 1.57e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02233 - - gmx:100782769 182.956