Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02228 ATGGGAAGCAGAAAGGAAGAAGAGAAGAACGAGAAAATTATCAGGGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGTAATAGTTTGGGACCGCAATATGTATGCACAAACTTTTGGACCTTTATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCCGTGTCAATGGCAAAGTTCACTTCACAAGAAGTTGATGCTCTTCAAAATGGTGGTAACCAGCGTGCAAGGGAAATATATTTGAAAACTTGGGACTTCCAAAGGCAGCGGTTGCCAGATAGCAGCAATGTTGATAAAATAAGGGAGTTTATAAGGAATGTGTATGTGGATAGAAGATATGCTGGAGCAAAGTCTTCTGAAAAGCCTCCAAGAGATGCACAGAGCCCTATAATTCATGAAGATGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGGCGCTATGGAAAACAAGCAGCTGCTTTAACCAGGAAACCTGGTTCAGATAAAGCTCGTTATGAAGGGAAAATGTCCAGTATTATCTATAGTCCCGGTCGCTTCAGCGATCATGCATATGATGACAGATTTGCAAATGAGGGATCTTCTGGTCCTAGAATTTCTGACTTTTCTGTGTCTAGTGGTTGTGAGCAATTCAAATCAGATGCTCAATCTCCTAAGTCTAATAAGGAGATTGGGTTTAGCAGTCCATCCTATCAGCATTCTGGTTCCAGCTCAAGTGAAGATGTATGGTCTCAAGCAAGAAATGCATCTCTAGAAACTAATGCCAGTTCCAAGAGAGATGCAGATGGAATTCATCGTCTGCAGAGAACTACATCATTGCAACCGGCAGACAGCAGCTCTTCATCCTTAGGATCTTACAATTCTGGTGGTTTAGTTGATTTTTTCTCAGAACCTATCCAATCTTCAGGATCCCTTCAGAATAAAGCATCAGGAATTCCACCACCATCTGGTCCTACCAGAACTGTTAGCTTGGACCTTTCCAAGGCACCACCGGCATCAGCTTCATCTGTTGATCTTTTTCAATTACCAGCAGCACCATCTCAAGCTCCATTGATGGATCTGTTTCAATTATCTGATATGTCAGCAGCTCCATCTTTCAATGGGAATCAACTCACACAAACATCCCAACTCACATCTATTGACTTATTTGCGGATCTACCTCAGCAGCCTTCTACTGCAACCTCAGATGAGAAATCATTGGAGTTATCTGTCCCTAAAAATGAAGGGTGGGCAACGTTTGATACGCCTCAGTGCGCATCATCTACTGCACAGCTGGAAATTCCAGCTGTGGTACCTTCAAGTGCTGAACCTTTGCAGGATAGATTTGATCCATTTTCAACCGTAAATGCAAATATGCAATGGCCATCTTTTGAAATTTCTAGTGCCGGTGTACCTTCTGTTACATCTAATATATGGCATGATGGTGTGTGGAATGGAGGAGAACAAGTTTCTGCAATGGCAACAAACACTGAACCATGGAATGCATTTGAAGATTCTGGTAACCATCTTCCTGTGGATACCGTTAGTCAAGGATTACAGTTGCCCAATTTTCCATCAGCTGATGATCATAGTTTGGGTTTACGAGCTTCTGAGGTTGGTGTACGGATGTTGTATTACAATGATAATCTGTATGATCTTGAAAAAAAATCGCAACTCACAACTTCTTTCTCCCCCCCCCCATAA 1743 0.4205 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQNGGNQRAREIYLKTWDFQRQRLPDSSNVDKIREFIRNVYVDRRYAGAKSSEKPPRDAQSPIIHEDEIRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKARYEGKMSSIIYSPGRFSDHAYDDRFANEGSSGPRISDFSVSSGCEQFKSDAQSPKSNKEIGFSSPSYQHSGSSSSEDVWSQARNASLETNASSKRDADGIHRLQRTTSLQPADSSSSSLGSYNSGGLVDFFSEPIQSSGSLQNKASGIPPPSGPTRTVSLDLSKAPPASASSVDLFQLPAAPSQAPLMDLFQLSDMSAAPSFNGNQLTQTSQLTSIDLFADLPQQPSTATSDEKSLELSVPKNEGWATFDTPQCASSTAQLEIPAVVPSSAEPLQDRFDPFSTVNANMQWPSFEISSAGVPSVTSNIWHDGVWNGGEQVSAMATNTEPWNAFEDSGNHLPVDTVSQGLQLPNFPSADDHSLGLRASEVGVRMLYYNDNLYDLEKKSQLTTSFSPPP. 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02228 580 CDD ArfGap_AGFG 11 121 - -
Seca10g02228 580 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Seca10g02228 580 SUPERFAMILY ArfGap/RecO-like zinc finger 10 122 IPR037278 -
Seca10g02228 580 MobiDBLite consensus disorder prediction 322 349 - -
Seca10g02228 580 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Seca10g02228 580 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Seca10g02228 580 PANTHER ARFGAP/RECO-RELATED 1 531 IPR044820 GO:0005096
Seca10g02228 580 Pfam Putative GTPase activating protein for Arf 12 122 IPR001164 GO:0005096
Seca10g02228 580 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Seca10g02228 580 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Seca10g02228 580 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Seca10g02228 580 MobiDBLite consensus disorder prediction 216 277 - -
Seca10g02228 580 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Seca10g02228 580 MobiDBLite consensus disorder prediction 206 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02228 Seca-Chr10 25827326 25834874 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02228 14 116 C2H2 Transcription Factor Family AT4G05330 35.088 2.46e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02228 K15044 - gmx:100788316 835.869