Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02223 ATGGATTCACTACACTTCAACAGTAGTGGTTATGGTTTCTATGGGGACATGAATGCTTACCCTTCAGTTCATTTTCCCTCTTCTGCTACCCTTCCTGGTCCCCAACCTCTGTATAACACTTTTGAGGTGATGGGTCATGCTGGTGATACAGAATCTGAAAGGTCTGATAGAGCCTTTCAGTTTTTGAACCCTTCAGTGTTTCATCCCCAGGAGAACATGGTAACAAAGAGAACCAACGATGAAGGGGATGATGGGTATTTTGGGGATAAGAACAAGAGCTTGTCTTTGCAACTTGGTGAGGAAAATGAAGCTAACAGTTCACCTGTCTCAGGGAAAATTGGACACACTAAGCTTTGTGTTAGAGGTCACTGGAGACCAGCTGAAGATGCAAAGCTTAAAGAGCTTGTTTCTCAATTTGGTCCTCAAAACTGGAACTCCATAGCAGAACATCTAGAAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAACAGCTTTCACTGAGGAAGAAGAGGAGAAGCTTCTAGCTGCTCACAGAATGTATGGTAACAAATGGGCCATGATTTCTAGGCTCTTTCCTGGGAGGACTGATAATGCTGTTAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGCAATCATGTTTCTATAGAAGGAGAAAGCCAACATTTCAAAGCCATTCACCACCAAAGGGTTTAAATTTGACTTTGTCAAACAATGTAGCAAGTGAATCAACCATCTCAAGCACCATTGATGAATCTAACTCAACATGCACCAACCTCTCCCTCACTCCTTCTTCAGCCAGACCAATTCCTAGGCCTTTTCACAACCCAAATCATGTTCAAAATTACCAAGCCTATGGATCACCAATGGGTATGTCTGGAGGAAGCAGGGCACCAACTGGGGATGTTGGTTTTGACAAGTTTTTTAGTACCTGGAAGGGTTCATGTGAGCATGGTCACATGGGAAAGCTAATGGGAGTGGACCAATCCAATTATTCAGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTACCACCAACAGGACTAATCTATCAAATTTTGGAGAAAGTGAAAATGTGGGGGATAAGATTAACATGTCATTTATTGACTTTCTTGGAGTAGGAGCTACATAG 1176 0.4235 MDSLHFNSSGYGFYGDMNAYPSVHFPSSATLPGPQPLYNTFEVMGHAGDTESERSDRAFQFLNPSVFHPQENMVTKRTNDEGDDGYFGDKNKSLSLQLGEENEANSSPVSGKIGHTKLCVRGHWRPAEDAKLKELVSQFGPQNWNSIAEHLEGRSGKSCRLRWFNQLDPRINRTAFTEEEEEKLLAAHRMYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREQSCFYRRRKPTFQSHSPPKGLNLTLSNNVASESTISSTIDESNSTCTNLSLTPSSARPIPRPFHNPNHVQNYQAYGSPMGMSGGSRAPTGDVGFDKFFSTWKGSCEHGHMGKLMGVDQSNYSDSNSEVSVSESVTTNRTNLSNFGESENVGDKINMSFIDFLGVGAT. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02223 391 FunFam MYB transcription factor 121 172 - -
Seca10g02223 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 167 IPR017930 -
Seca10g02223 391 PANTHER MYB PROTEIN-RELATED 121 274 - -
Seca10g02223 391 CDD SANT 124 165 IPR001005 -
Seca10g02223 391 Gene3D - 174 239 - -
Seca10g02223 391 Gene3D - 120 172 - -
Seca10g02223 391 MobiDBLite consensus disorder prediction 263 286 - -
Seca10g02223 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 168 222 IPR017930 -
Seca10g02223 391 SMART sant 172 220 IPR001005 -
Seca10g02223 391 SMART sant 120 169 IPR001005 -
Seca10g02223 391 FunFam MYB transcription factor 174 243 - -
Seca10g02223 391 CDD SANT 183 215 IPR001005 -
Seca10g02223 391 ProSiteProfiles Myb-like domain profile. 121 167 IPR001005 -
Seca10g02223 391 MobiDBLite consensus disorder prediction 263 279 - -
Seca10g02223 391 ProSiteProfiles Myb-like domain profile. 168 218 IPR001005 -
Seca10g02223 391 SUPERFAMILY Homeodomain-like 120 214 IPR009057 -
Seca10g02223 391 Pfam Myb-like DNA-binding domain 124 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02223 Seca-Chr10 25653838 25656133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02223 91 287 MYB Transcription Factor Family AT5G17800 57.658 3.34e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g02223 Myb_DNA-bind_6 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02223 K09422 - jre:109000849 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02223 10 25653838 25656133 Seca10g02223 10 25653838 25656133 ECH