Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02219 ATGAGTGGTGAAGGGGACATGTCTGATAAGGATCCGGGTATTAGGCTCTTTGGTAGGAACATTCCGGTGCCGGAATGTCAGATTCCGGCGAGCTCTCAAATGGGTTGTCAGATTCAAGCCTACTCTGCAACCATGAATGCTTGCAGTGGCTTAAAGAAAACAGAAGCTGAAATGCCTTGCACTGAAAACTCTGTGCAACCTGAGAATTCTTCTGATTTAAGGGATAGCAAAAAAGAGTCCCTTCTTAATATGCATGAAAATGAATCAAAATTAAACACCAGCCCTATGGAAGATAATATGGAGACTAGCAGCACAGATCAAGATAAAGTCTTCAAGAAACCAGACAAGATTCTTCAATGTCCAAGATGCAACAATTTGGAGACTAAATTTTGTTATTTCAACAACTACAATGTCAATCAACCTCGGCATTTCTGCAAGAACTGTCAAAGGTATTGGACTGCTGGTGGAACAATGAGAAATGTTCCTGTTGGTGCTGGGAGACGGAAGAACAAGCACATAGCTTCTCAATACCGGCAAATTTTTGTATCTTCTGAAGGAATTCCAACCACCAGGTTAGAAACCAAAGACTGTCCTAGCCACCAACTTGTCTCAACTCTTGAATCTGGTGCTGTTTTCAGGTCTTCAACAGATAATGGTACTGTATTAAAATTTGGTCCAGATGCCCCTCTCTGTGAATCCATGGAATCAATGTTTAATCTTAGAAACCAACAAAGAAATGTTGATGCAAACTCTATGAATTGTTCAGAAAATGGAGAGGAAGAGGTATCCATATGTGGATCTTCTGTGACAAATGCCTGCACTCAAGGAAATGAATTGTCAGAAAATAGTACATCAAAACCTTTACAGTGTTACCCTGTTCCTCCATGGGTACTTCCTTGGAATCCAGGTTGGAACAATGTTGCTTCCATGGCAGGAGTTCATCCATCTTCACTGCATCCGGCTACAATGCGGTGGTGTCCCGCGCCAATGGTGGCAGTTCCAACCATTTGTCCACCAAACATTCCCTTGCAAATTGTTCCTGGATCATACTGGAATGGAACACCTTTGTGGGCTGCTGGAAATGGGACAGTTTCAATAGGTTCCAATGGTTGCCTTTCACCATCTTCCTCTACTAGTAACAGCTGCTGCTCAGGCAATGGCCCCCCAACCCTTGGCAAACACCCTAGAGACACTGTTTTCACAGATGAACAGAAATCAGAAAAGTGTGTTTTGATTCCAAAGACCCTTAGAATTGATGATCCAAATGAGGCCTCAAAAAGTCCTATATGGGCTACATTAGGTATCAAGCCTGATAACCATCAATTTGTACCAGAAGATGCTGTTTCCAATAAAATAAAACATAAAGGAGAAGGCAAAGACCGTGTATTAGGAGTGTCTCAAATCTTGGAAGCTAATCCTGCAGCTATTTCTAGAGCTCATGCATTCCAGGAGAGCACATAA 1461 0.4223 MSGEGDMSDKDPGIRLFGRNIPVPECQIPASSQMGCQIQAYSATMNACSGLKKTEAEMPCTENSVQPENSSDLRDSKKESLLNMHENESKLNTSPMEDNMETSSTDQDKVFKKPDKILQCPRCNNLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHIASQYRQIFVSSEGIPTTRLETKDCPSHQLVSTLESGAVFRSSTDNGTVLKFGPDAPLCESMESMFNLRNQQRNVDANSMNCSENGEEEVSICGSSVTNACTQGNELSENSTSKPLQCYPVPPWVLPWNPGWNNVASMAGVHPSSLHPATMRWCPAPMVAVPTICPPNIPLQIVPGSYWNGTPLWAAGNGTVSIGSNGCLSPSSSTSNSCCSGNGPPTLGKHPRDTVFTDEQKSEKCVLIPKTLRIDDPNEASKSPIWATLGIKPDNHQFVPEDAVSNKIKHKGEGKDRVLGVSQILEANPAAISRAHAFQEST. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02219 486 MobiDBLite consensus disorder prediction 87 108 - -
Seca10g02219 486 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
Seca10g02219 486 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Seca10g02219 486 PANTHER CYCLIC DOF FACTOR 2 9 486 IPR045174 GO:0003700|GO:0006355
Seca10g02219 486 MobiDBLite consensus disorder prediction 87 101 - -
Seca10g02219 486 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02219 Seca-Chr10 25541701 25545236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02219 11 486 C2C2-Dof Transcription Factor Family AT5G39660 35.361 3.06e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca10g02219 zf-Dof 6.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02219 - - ccaj:109792807 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02219 10 25541701 25545236 Seca10g02219 10 25541701 25545236 ECH