Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02206 ATGTTGTGGGTGGACAAGTATCGTCCCAAATCCCTCGACCAGGTTATGGTCCACATCGACATCGCTCAAAATCTCAAGAAATTGGTTACGGAACAAGATTGCCCCCATTTACTCTTCTATGGCCCATCTGGCTCTGGCAAGAAAACCCTAATCATGGCTCTTCTCCGCCAAATGTTCGGACCCGGTGCCGAAAAGGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCCGGAAGTAGATCTATTGATTTAGAGCTGACAACATTGTCTAGTACCAATCACATTGAAATAAGTCCAAGTGATGCAGGCTTTCAGGACAGATATGTTGTTCAAGAAGTAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAAGGGAAGAAAGGATTTAAAGTGCTAGTGCTCAATGACGTTGACAAACTCTCTAGGGAAGCTCAACATTCTCTTCGCAGAACAATGGAGAAGTACAGTGCTTATTGCAGACTAATTCTTTGCTGCAATAGTTCTTCAAGAGTCACAGAAGCAATCCGCTCCCGTTGTCTAAATATACGAATAAATGCACCAAGTGAAGAACAGATTGTGGAAGTTTTAGAGTTCATTGGTAAGAAAGAAGGGCTGCAACTTCCTTCTGATTTTGCTGCTCGCATAGCAGAGAAATCAAATCGGAATTTAAGGAGGGCCATATTGTCATTTGAGACTTGCCGTGTCCAACAGTATCCTTTCACTAGCAAACAAACAATTCCCCCAATGGACTGGGAAGAATATATTTCTGAAATTGCATCTGACATAATGAAGGAACAGAGCCCAAAAAGGTTTGCTTTTGATACAGTTCATTGTTGTCTGATCTTTGATAAATAA 861 0.4146 MLWVDKYRPKSLDQVMVHIDIAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFGPGAEKVKVENRTWKVDAGSRSIDLELTTLSSTNHIEISPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNIRINAPSEEQIVEVLEFIGKKEGLQLPSDFAARIAEKSNRNLRRAILSFETCRVQQYPFTSKQTIPPMDWEEYISEIASDIMKEQSPKRFAFDTVHCCLIFDK. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02206 286 Gene3D - 1 189 IPR027417 -
Seca10g02206 286 FunFam replication factor C subunit 3 190 248 - -
Seca10g02206 286 FunFam Replication factor C subunit 5 1 189 - -
Seca10g02206 286 CDD AAA 35 190 - -
Seca10g02206 286 SMART AAA_5 33 192 IPR003593 GO:0016887
Seca10g02206 286 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 3 273 - -
Seca10g02206 286 Pfam DNA polymerase III, delta subunit 21 188 - -
Seca10g02206 286 Gene3D - 190 249 - -
Seca10g02206 286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 240 IPR027417 -
Seca10g02206 286 CDD HLD_clamp_RFC 189 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02206 Seca-Chr10 25333036 25337721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02206 1 273 Core DNA Replication Machinery Family AT5G27740 83.516 1.48e-178 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02206 K10756 - gmx:100818329 524.242