Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02201 ATGGCCGAAGAACGTAATAATACCAGAAAGTGTTGCAACCCGAACGAGGCTCGTCTGCTTCAATGCGCAGACCTGATCCTACCATGGCTAACTCCACCAGACCTCGCCAACCTCTCCATCACTTGCAAATCCCTGTGCCAACTCTCCCACTCCATCACTCTCCGCCGCTCCTCCGACGCTTCTAGAACCTTCGAGAATTTTCCAGTCCCCTTTCTCAACACCCTCGACCCCCACCCTTACGCCTACTTCCTCTACACCCCTTCCATCCTTCTCCCCTCCTCCCACCTCCCTCGCCAACCCTGGGGAGGCCCTTCCGTAATTTCCCCTTCCCCGCCGAGTCACCTTCGTCACGCGGAATCGGTGAGTCTGGTGGACGAGTTAGGTCACGCCGTGTCGGGATGCGACTGCAACGAGGCCTGTGGGGATGCGAGTTTGGGGTGTCCTTGTCTAGGTTTTGATGGGTTGGATGACGTGGACAGGGAGTGCGGACCGGGTTGCCGGTGTGGACCGGAGTGTGGAAACCGGTCGAGCCAGAAAGGGGTTGCGGTTCGGGTGAAGATTGTGAGGGATAGGAGGAAAGGGTGGGGTTTGTGTGCTGACCAGTTCATTCCCAAAGGGCAATTTGTGTTTGAGTATGCAGGTGAACTCTTGACAACCAAGGAAGCACAGAGGAGACAACTATGTTATGATGAACTAGCATTGCATGGTCGATTCTCTTCTGCACTTTTAGTTGTGAGGGAGCATCTTCCGTCTGGAAAGGCATGCTTGAGATTGAACATTGATGCCACAAGAATAGGAAATGTTGCGCGGTTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCAGGAGCTTTGTTCCCCCGCCTATGCTTCTTTGCTTTAAAAGATATCCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGATTGCCATGCTATTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGA 1029 0.5141 MAEERNNTRKCCNPNEARLLQCADLILPWLTPPDLANLSITCKSLCQLSHSITLRRSSDASRTFENFPVPFLNTLDPHPYAYFLYTPSILLPSSHLPRQPWGGPSVISPSPPSHLRHAESVSLVDELGHAVSGCDCNEACGDASLGCPCLGFDGLDDVDRECGPGCRCGPECGNRSSQKGVAVRVKIVRDRRKGWGLCADQFIPKGQFVFEYAGELLTTKEAQRRQLCYDELALHGRFSSALLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGALFPRLCFFALKDIQEDEELTFSYGEIRKRPNGLPCYCNSPSCFGTLPSEDT. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02201 342 ProSiteProfiles SET domain profile. 183 315 IPR001214 GO:0005515
Seca10g02201 342 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 56 331 - -
Seca10g02201 342 Gene3D SET domain 53 337 IPR046341 -
Seca10g02201 342 SUPERFAMILY SET domain 66 335 IPR046341 -
Seca10g02201 342 Pfam SET domain 194 315 IPR001214 GO:0005515
Seca10g02201 342 ProSiteProfiles Post-SET domain profile. 322 338 IPR003616 -
Seca10g02201 342 SMART set_7 183 321 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02201 Seca-Chr10 25244878 25247215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02201 161 337 C2H2 Transcription Factor Family AT2G23740 33.158 3.23e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g02201 SET 8.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02201 K11433 - gmx:100786871 490.73