Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02199 ATGAAAAAAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGGCAACAATGTTATGATAAACTAGCATTGCATGGTCGTTTCTCTTCTACTCTTTTAGTTGTGAGGGAGCATCTTCCATCTGGAAAGGCATGCTTGAGATTGAACATTGATGCCACAAGAATACAAAATGTTGCGCGGTTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAGAGCTAGTTAGAAGTTCGGGAGCTTTGTTCCCCTGCCTTTGCTTCTTTGCTTTAAAAGATATCCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAGTGGATTGCCATGCTATTGCAATAGCCCTTCTTGCTTTGGAACATTGCCCTCAGAAGACACTTGA 399 0.4085 MKKGELLTTKEAQRRQQCYDKLALHGRFSSTLLVVREHLPSGKACLRLNIDATRIQNVARFVNHSCDGGNLSTELVRSSGALFPCLCFFALKDIQEDEELTFSYGEIRKRPSGLPCYCNSPSCFGTLPSEDT. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02199 132 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 4 126 - -
Seca10g02199 132 Pfam SET domain 48 105 IPR001214 GO:0005515
Seca10g02199 132 ProSiteProfiles SET domain profile. 1 105 IPR001214 GO:0005515
Seca10g02199 132 ProSiteProfiles Post-SET domain profile. 112 128 IPR003616 -
Seca10g02199 132 Gene3D SET domain 2 132 IPR046341 -
Seca10g02199 132 SUPERFAMILY SET domain 3 125 IPR046341 -
Seca10g02199 132 SMART set_7 14 111 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02199 Seca-Chr10 25240189 25240587 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02199 4 127 C2H2 Transcription Factor Family AT2G23740 29.630 1.38e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g02199 SET 2.1e-12 No_clan