Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02198 ATGAAAAAAGGTGAACTATTGACAACCAAGGAAGCACAGAGGAGGCAACAATGTTATGATAAACTAGCATTGCATGGTCGTTTCTCTTCTACTCTTTTAGTTGTGAGGGAGCATCTTCCATCTGGAAAGGCATGCTTGAGATTGAACATTGATGCCACAAGAATAGGAAATGTTGCGCGGTTTGTAAATCATTCATGTGATGGTGGTAATTTAAGCACAAAGCTAGTTAGAAGTTCGGGAGTTTTGTTCCCCTGCCTTTGCTTCTTTGCTTTAAAAGATATCCAAGAAGATGAAGAGCTTACTTTTAGCTATGGAGAAATCAGGAAAAGGCCTAATGGATTGCCATGCTATTGCAATAACCCTTCTTGCTTTAGAACATTGCCTTCAGAAGACACTTGA 399 0.396 MKKGELLTTKEAQRRQQCYDKLALHGRFSSTLLVVREHLPSGKACLRLNIDATRIGNVARFVNHSCDGGNLSTKLVRSSGVLFPCLCFFALKDIQEDEELTFSYGEIRKRPNGLPCYCNNPSCFRTLPSEDT. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02198 132 SMART set_7 14 111 IPR001214 GO:0005515
Seca10g02198 132 Pfam SET domain 47 105 IPR001214 GO:0005515
Seca10g02198 132 ProSiteProfiles SET domain profile. 1 105 IPR001214 GO:0005515
Seca10g02198 132 Gene3D SET domain 2 132 IPR046341 -
Seca10g02198 132 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUV39H 4 126 - -
Seca10g02198 132 SUPERFAMILY SET domain 3 123 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02198 Seca-Chr10 25238435 25238833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02198 4 123 C2H2 Transcription Factor Family AT2G23740 29.323 2.02e-08 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca10g02198 SET 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02198 K11433 - gmx:100786871 231.876