Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02197 ATGGCTGAGCCAGAGCCACAAGGTGGTGGTGATCATGCCAATTCAGGATCCAGACGTGGTAAAGGCCCTGCTTCAAAGCGTGCCACCATGTCAACACCAAACCAAGAGGCATCAACAGCACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAATGCGGTATTGGATGCATATTTGCACCCCACTTTGGTTCAGACCAGGGTTCAGCCAGGTTTGCAGCTGTGCACAAAGTGTTTGGTGCTAGCAATGTGTCAAAGATGTTGTCCAGTATTCCAGAGGAACACCGAAATGAAGCGGTGTCCACATTATCCTATGAGGCTCAAGCAAGGATATCTGATCCGGTTTATGGTTGTGTCTCCACAATCCTTGCTTTACAACAACAGGTGGCAACATTGCAAGCAGAGGTGGGTATGATGCAAACCCAGGTGATGATGAATACTAATAGGTTGGCATGTGCAAGTGCTCTTCAGAGTTCACAACAGCAAATACTACAGCCAGCGTACTCCAACAACAATTCATCTGCTTCTACTGCAAATTTTATGAACTTGAACACCTTCAATAACCCTGCTGCTGGTGGTGCTAGTGTTGGTGGTTTTGATCTTACAATGGGGACAACACCCTCATCACACAGCTTAGAGCCTCTTCGACTCTCTAGCTTGTCCCAATATGATCATGAGGAAGAAGATGAACAAGAAAGCACCATTCCAAGCCTCTTCAACCGTCGTCAGTGA 729 0.4719 MAEPEPQGGGDHANSGSRRGKGPASKRATMSTPNQEASTAPCGACKFLRRKCGIGCIFAPHFGSDQGSARFAAVHKVFGASNVSKMLSSIPEEHRNEAVSTLSYEAQARISDPVYGCVSTILALQQQVATLQAEVGMMQTQVMMNTNRLACASALQSSQQQILQPAYSNNNSSASTANFMNLNTFNNPAAGGASVGGFDLTMGTTPSSHSLEPLRLSSLSQYDHEEEDEQESTIPSLFNRRQ. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02197 242 Pfam Lateral organ boundaries (LOB) domain 41 139 IPR004883 -
Seca10g02197 242 MobiDBLite consensus disorder prediction 218 242 - -
Seca10g02197 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 38 182 - -
Seca10g02197 242 ProSiteProfiles LOB domain profile. 40 142 IPR004883 -
Seca10g02197 242 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02197 Seca-Chr10 25236122 25236969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02197 12 232 AS2 family AT3G03760 49.796 6.79e-67 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca10g02197 LOB 9.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02197 - - aprc:113866578 256.529