Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02196 ATGAAGTTTGGAACATTTGGCTTGCCACCTTATCGAGCTTTCTCACTGGAAGAGATTGTGGCAGCTACAAACAACTTTGACATGGCTTCTTTTATGGGTGAAGGTTCTCAAGGAAAGATGAATAGAGGTCAACTGAAGGATGGTTCACTTGTTGCCATTAGATGTGTGAAAATGACCAAAAGCTACAGCACTCAAGACTTCATCCATCACATAGAGATGATATCAAAATACAGGCATCGTCATATAGTCAGCGTTCTTGGACACTGCTTTGAATGTTACTTAGATGATTCAAGTGTCAGCACAATATTTATTGTCTTTGAGTATGTACCAAATGGAACACTCAAGAGCTGGATTTCAGATGGGCATTATAGAAAGACCCTGACTTGGACCCAACGCATAGCAGCTGCAACTGGAATAGCAAAGGGCATTGAATTTTTGCATACAGGGATTGTCCCTGGTGTATATTCAAACAATCTCAAAATAACAGATGTTTTACTGGACCAGAATTTTGTTGCAAAAATCAGCAGTTATAACCTGCCTTTGTTATCTAACATGGGAAAGGTTGGGCAGGGAAATCCTTCCAGTGGATTCAAAAGTTCTACTATTAAGAAAAGTGTAAAAAATGAAGATAAGTCTGATATATATGACTTTGGAGTAATACTGCTGGAACTCATTCTTGGAAGGACAATAAAGGCAAGGAATGTGGAGACATTAAAGGATCTGGTAATAAAGGGATTCTGA 741 0.3873 MKFGTFGLPPYRAFSLEEIVAATNNFDMASFMGEGSQGKMNRGQLKDGSLVAIRCVKMTKSYSTQDFIHHIEMISKYRHRHIVSVLGHCFECYLDDSSVSTIFIVFEYVPNGTLKSWISDGHYRKTLTWTQRIAAATGIAKGIEFLHTGIVPGVYSNNLKITDVLLDQNFVAKISSYNLPLLSNMGKVGQGNPSSGFKSSTIKKSVKNEDKSDIYDFGVILLELILGRTIKARNVETLKDLVIKGF. 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02196 246 SUPERFAMILY Protein kinase-like (PK-like) 8 230 IPR011009 -
Seca10g02196 246 Gene3D Transferase(Phosphotransferase) domain 1 110 245 - -
Seca10g02196 246 Gene3D Phosphorylase Kinase; domain 1 5 108 - -
Seca10g02196 246 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 230 - -
Seca10g02196 246 Pfam Protein tyrosine and serine/threonine kinase 30 226 IPR001245 GO:0004672|GO:0006468
Seca10g02196 246 ProSiteProfiles Protein kinase domain profile. 26 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02196 246 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 1 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02196 Seca-Chr10 25180984 25183346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02196 1 240 Miscellaneous Gene Families AT3G03770 67.355 1.78e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Seca10g02196 PK_Tyr_Ser-Thr 1.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02196 - - gmx:100813207 419.468