Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02187 ATGGATAGGCTCATAAGGTTAGATCCATCAAACATAGTCCTAATCAGGGTTGAACCAGGGCAAAAGTGCCATGGCAAGATCACCTTAAGAAATGTCATGTACACCATGCCAGTGGCATTTAGGCTTCAGCCATTGATCAAGAACCGTTACACAGTGAAACCACAATCAGGGATCATATCCCCTTTGGCCACACTCATCATAGAGATCATCTATATTCCTCCACCAGGCTCTTATCTCCCCCACACTTTTCCTCACTCAGATGATTCTTTCCTTCTCCATAGTGTCTTGGCTCCTGGTGCAGCCATCAAAGAACCTTCTTCCATGTTTGATGCTGTCCCCAATGACTGGTTCACCGCCAAAAAGAAACAAGTCTTCATTGATAGTGGCATCAAAATCATGTTTGTGGGGTCACAGATTCTGGCTCAGCTTGTTGAAGATGGTTCAATGGATGACATCAGAGAGGTGCTGGAAAAAAGTGACCCATCATGGAAGGCTGTGAACTCTACAGACCCACAAGGTCAAACTTTACTTCACTTAGCCATTTCAAGAGGAAGGGCTGATCTTGTTCAATTACTCCTTGAATTTGAGCCTGATGTAGAAGCTCCAAGTCGTTCTGGCTCAACCCCACTTGAGGTTGCATCTTCCTCTGGTGAAGCTTTAATTGTTGAGCTTCTTTTAGCTCATAAGGCCAACACAGAACGATCAAAATCATCCATTTATGGACCAATCCATTACGCAACAAGAGAAGGACACATGGAGGTTTTAAGGCTTCTTTTACTCAAAGGTGCCAAAGTGGACACACTCACAAAAGATGGTAACACAGCCTTACACCTTGCTGTTGAAGAATGCAGAAGAGACTGTGCTAGGCTCCTACTAGCAAATGGTGCAAGAACTGATATAGGAAATATCAGAGAAGGTGACACCCCTTTGCACATAGCAGCTGCCATAGGAGATGAGAACATGGTCAAGCTCTTGCTCCAAAAGGGTGCCAACAAATATGTGAGGAACAAACAAGGGAAGACTTCATATGATGTTGCAGCTGAGAATGGCCATGCACGTCTCTTTGATATGCTTCGTTTAGGGGACAACTTGTGCGTAGCTGCGAGAAAAGGAGAAGTGAGGACAATCCAAAAGGTTCTTGAGAGTGGTGCAGCCATCAATGGAAAGGACCAACATGGATGGACAGCACTGCACAGAGCATGCTTTAAAGGGAGAAATGATGCAGTTAGGTTCCTTGTGGAGAAAGGGATAGATGTGGATGCAAAGGATGAAGATGGGTACACAGCATTGCACTGTGCAGTTGAGTCAGGACATGTAGATGTGACAGAGTTTTTGGTGAAGAAAGGTGCAGATGTTGAAGCCAGGACTAACAAAGGTGTGAGTGCTTTACAAATAGCAGAGTCATTGCATTATGTGGGGATCACAAGGATACTTGTTAATGGTGGGGCTAGCAGGGAAAGTTTAGGTCAAGTACCAATATCACCTGCTAAAATTCCATTTGGGACTAAAGTGGAAGCTGGAGGTATGATGATGAAGAAGAAGGTGGGTAGAACAAGAATGCTAAGGGGTAGCTTTGATCGTTCATTGGCTTTGGCTGTGATCTAG 1605 0.4455 MDRLIRLDPSNIVLIRVEPGQKCHGKITLRNVMYTMPVAFRLQPLIKNRYTVKPQSGIISPLATLIIEIIYIPPPGSYLPHTFPHSDDSFLLHSVLAPGAAIKEPSSMFDAVPNDWFTAKKKQVFIDSGIKIMFVGSQILAQLVEDGSMDDIREVLEKSDPSWKAVNSTDPQGQTLLHLAISRGRADLVQLLLEFEPDVEAPSRSGSTPLEVASSSGEALIVELLLAHKANTERSKSSIYGPIHYATREGHMEVLRLLLLKGAKVDTLTKDGNTALHLAVEECRRDCARLLLANGARTDIGNIREGDTPLHIAAAIGDENMVKLLLQKGANKYVRNKQGKTSYDVAAENGHARLFDMLRLGDNLCVAARKGEVRTIQKVLESGAAINGKDQHGWTALHRACFKGRNDAVRFLVEKGIDVDAKDEDGYTALHCAVESGHVDVTEFLVKKGADVEARTNKGVSALQIAESLHYVGITRILVNGGASRESLGQVPISPAKIPFGTKVEAGGMMMKKKVGRTRMLRGSFDRSLALAVI. 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02187 534 Pfam Ankyrin repeats (3 copies) 242 299 IPR002110 GO:0005515
Seca10g02187 534 Pfam Ankyrin repeats (3 copies) 364 455 IPR002110 GO:0005515
Seca10g02187 534 Pfam Ankyrin repeats (3 copies) 152 232 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 242 266 - -
Seca10g02187 534 Gene3D Immunoglobulins 1 134 IPR013783 -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 305 331 - -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Seca10g02187 534 Gene3D - 429 490 IPR036770 -
Seca10g02187 534 SUPERFAMILY PapD-like 2 150 IPR008962 -
Seca10g02187 534 Pfam Ankyrin repeat 306 331 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 172 201 - -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Seca10g02187 534 SUPERFAMILY Ankyrin repeat 166 491 IPR036770 -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Seca10g02187 534 Gene3D - 135 360 IPR036770 -
Seca10g02187 534 SMART ANK_2a 172 201 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 425 454 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 338 366 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 205 234 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 392 421 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 271 300 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 305 334 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 238 267 IPR002110 GO:0005515
Seca10g02187 534 SMART ANK_2a 458 487 IPR002110 GO:0005515
Seca10g02187 534 Pfam MSP (Major sperm protein) domain 5 109 IPR000535 -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Seca10g02187 534 Gene3D - 362 428 IPR036770 -
Seca10g02187 534 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Seca10g02187 534 PRINTS Ankyrin repeat signature 441 455 IPR002110 GO:0005515
Seca10g02187 534 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Seca10g02187 534 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Seca10g02187 534 PANTHER ROLLING PEBBLES, ISOFORM B 237 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02187 Seca-Chr10 25055395 25056999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02187 307 480 Ion Channels AT4G32500 29.570 1.68e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02187 - - gmx:100782444 810.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g05096 10 116692516 116693952 Seca10g02187 10 25055395 25056999 PCT