Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02170 ATGAATGGAGGAGACCTGGGTTTGGATAGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACAGTATGCAAAGCTGGATAATCTTTTGAGAAAGCTCCAGGATGCCCACGAGGAGTCCAAATCTGTGACCAAGGCACCTGCTATGAAGGGTATAAAACAAAGAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCACATTACTTAAAGACCAAAATTGAAGAACTCGACAAAGAGAATTTGGCAAATAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGCTGCTGACCGGTCAAGAACAGCAACAACCCTTTCCTTAAAAAAGAAACTGAAGGACAAGATGGCTGAATTCCAGAACCTGAGAGAATCCATCCATCAAGAATATCGTGAGGTTGTTGAGAGACGTGTCTTTACAGTGACGGGCACGAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGAGATAACGAACAAATTTTCCAGAAAGCTATTCAGGAACAGGGACGAGGCCAGATAATGGACACACTGGCAGAAATTCATGAGAGACATGAAGCAGTTAGAGACATGGAGAGAAAGCTTCTTGATTTACAACAGGTATTTAATTAG 612 0.4167 MNGGDLGLDSFFKKVQELDKQYAKLDNLLRKLQDAHEESKSVTKAPAMKGIKQRMEKDVDEVKKTAHYLKTKIEELDKENLANRQKPGCGKGSAADRSRTATTLSLKKKLKDKMAEFQNLRESIHQEYREVVERRVFTVTGTRADEETIDRLIETGDNEQIFQKAIQEQGRGQIMDTLAEIHERHEAVRDMERKLLDLQQVFN. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02170 203 Coils Coil 107 127 - -
Seca10g02170 203 Coils Coil 15 45 - -
Seca10g02170 203 CDD SynN 8 165 IPR006011 GO:0016020
Seca10g02170 203 Pfam Syntaxin 10 202 IPR006011 GO:0016020
Seca10g02170 203 SUPERFAMILY t-snare proteins 8 203 IPR010989 GO:0016020|GO:0016192
Seca10g02170 203 Coils Coil 59 79 - -
Seca10g02170 203 FunFam Syntaxin 132 3 132 - -
Seca10g02170 203 Gene3D - 6 203 - -
Seca10g02170 203 SMART SynN_4 3 129 IPR006011 GO:0016020
Seca10g02170 203 MobiDBLite consensus disorder prediction 35 57 - -
Seca10g02170 203 MobiDBLite consensus disorder prediction 82 101 - -
Seca10g02170 203 PANTHER SYNTAXIN 13 202 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02170 Seca-Chr10 24837026 24841502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02170 2 202 SNARE and Associated Proteins AT3G03800 76.617 3.06e-113 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02170 K08486 - gmx:100306329 359.377