Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02169 ATGGATCTTCAATTTCAGAAACCAAAGAAGCATTTAAGACCCAGCATATCAAAAGGAAGCAAATTCAAAGGGAGAAACAGAAACAACAACACAAACAAGTTTGTTGGGGTGAGACAAAGACCTTCAGGGAGATGGGTTGCTGAGATAAAGGACACAACACAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAAGAAGCAGCCAGAGCTTATGATGAAGCTGCATGTCTTCTTCGTGGATCAAACACTAGAACAAACTTCATCACTCATGTTTCCTTGGATTCTCCTCTTGCTTCTCGGATTAGAAATCTTCTTAACAACAGAAAAGGTACCACCAAACAACAGGAACATGCAGAGGATGCATCATCTGTCACAAGAGTTAGCAGCATCACTAGCAGTGATAGCACAAGTAGCAACAGTACTAATTCAAGCAATGAAATCAGTGAAAACTCACTTTCTACACCAAACACACAACTATTTGTTGATGCTTATAGACCTGATTTGAGCAATTTCATGGAGAAGTCTGAGTCAGGTTCTCAGTCCAATCTTTCATGGGGTTCTGAACCTGTTTTTGATGGTTTTCCTTTTGGTCAAGTGTTGGATATACCTAACCCTGATGGCCTGTCTGATATGGCTAATTTGGAGCTTTCAGAATTTGAAAGGATGAAAGTTGAAAGACAAATATCAGCTTCACTTTATGCAATTAATGGTGTGCAAGAGTACATGGAAACTGTTCAGGACTCTAATGAAGCTCTCTGGGATCTTCCATCTCTGTCCTCATTTTTCTGTTAA 798 0.3997 MDLQFQKPKKHLRPSISKGSKFKGRNRNNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGTTKQQEHAEDASSVTRVSSITSSDSTSSNSTNSSNEISENSLSTPNTQLFVDAYRPDLSNFMEKSESGSQSNLSWGSEPVFDGFPFGQVLDIPNPDGLSDMANLELSEFERMKVERQISASLYAINGVQEYMETVQDSNEALWDLPSLSSFFC. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02169 265 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Seca10g02169 265 MobiDBLite consensus disorder prediction 21 35 - -
Seca10g02169 265 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Seca10g02169 265 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Seca10g02169 265 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Seca10g02169 265 MobiDBLite consensus disorder prediction 109 154 - -
Seca10g02169 265 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Seca10g02169 265 FunFam ethylene-responsive transcription factor RAP2-11 32 91 - -
Seca10g02169 265 CDD AP2 33 89 IPR001471 GO:0003700|GO:0006355
Seca10g02169 265 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Seca10g02169 265 MobiDBLite consensus disorder prediction 123 154 - -
Seca10g02169 265 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 231 - -
Seca10g02169 265 MobiDBLite consensus disorder prediction 1 35 - -
Seca10g02169 265 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02169 Seca-Chr10 24825358 24826155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02169 21 265 AP2-EREBP Transcription Factor Family AT5G19790 45.736 2.58e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca10g02169 AP2 5.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02169 K09286 - gmx:100796898 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02169 10 24825358 24826155 Seca10g02169 10 24825358 24826155 ECH
Seca10g02169 10 24825358 24826155 Seca10g02169 10 24825358 24826155 PCT