Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02166 ATGGATTTGACAGCGGAGAAGAAGGAATCAGAGAGCAACAACAACCCTGAAATTTCCAATCAAATCACAGATTCTGCTTCTCAATTAGCTTCTGACGCCAACAATAACAACTATAACAAAGAAGCCGAAGAGCGTCAAGCACGTGAACTCAAAGCTGGCCTTCACCCCTTAAAGAACAAATTTGTGTTTTGGTACACGCGTCGAACACCTGGAGTTCGAAATCAAACATCATACGAGGACAACATAAAGAAAATTGTTGATTTCAGTACAGTTGAAGGATTTTGGGTCTGCTATTGCCATCTTGCTCGTCCTTCTTCTTTGCCTAGTCCAACAGATTTGCATCTTTTTAAAGAAGGAATTCGTCCATTATGGGAGGACTCTGCTAACTGCAATGGTGGTAAATGGATTATACGATTCAAAAAAGTTGTCTCAGGTCGTTTCTGGGAAGACCTGGTTCTTGCCTTAGTGGGTGACCAATTGGATTATGGGGATAACATATGTGGTGCAGTACTAAGCATTCGATTCAATGAGGATATATTGAGTGTCTGGAATCGCAATGCATCTGATCATCAGGCTGTAATGGCTCTGAGAGATTCAATCAAACGTCACTTAAAGCTTCCTCACAGCTATGTTATGGAGTACAAGCCCCATGATGCTTCTCTGCGAGACAATTCATCCTACAGGAACACTTGGTTGCGAGGCTAG 705 0.4227 MDLTAEKKESESNNNPEISNQITDSASQLASDANNNNYNKEAEERQARELKAGLHPLKNKFVFWYTRRTPGVRNQTSYEDNIKKIVDFSTVEGFWVCYCHLARPSSLPSPTDLHLFKEGIRPLWEDSANCNGGKWIIRFKKVVSGRFWEDLVLALVGDQLDYGDNICGAVLSIRFNEDILSVWNRNASDHQAVMALRDSIKRHLKLPHSYVMEYKPHDASLRDNSSYRNTWLRG. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02166 234 Gene3D RNA Cap, Translation Initiation Factor Eif4e 27 227 IPR023398 -
Seca10g02166 234 MobiDBLite consensus disorder prediction 14 37 - -
Seca10g02166 234 SUPERFAMILY eIF4e-like 35 230 IPR023398 -
Seca10g02166 234 Pfam Eukaryotic initiation factor 4E 56 214 IPR001040 GO:0003723|GO:0003743|GO:0006413
Seca10g02166 234 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 29 223 IPR001040 GO:0003723|GO:0003743|GO:0006413
Seca10g02166 234 ProSitePatterns Eukaryotic initiation factor 4E signature. 112 135 IPR019770 GO:0003723|GO:0003743|GO:0005737|GO:0006413
Seca10g02166 234 FunFam Eukaryotic translation initiation factor NCBP 26 227 - -
Seca10g02166 234 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02166 Seca-Chr10 24802199 24805392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02166 42 234 Eukaryotic Initiation Factors Gene Family AT5G18110 86.010 9.88e-127 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02166 K03259 - gmx:100499744 416.772