Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02149 ATGGACATGGATGTTTGCCGGAATGTATCACTTTCCGGTGACTGTCAGCAACAACTTTCTACCCTTGATGACCTTTTCTCTGCCCAGAACACGGAAGTGGATTTTGGCATGGAATGGCTATCAGTGTTTGTGGAAGACTGTTTTTCCAGTAAGCCAAGTTGTCTCTTGGCCCCTGCATCTGCTGGTGTTGAAAATACAAGTACAACCAACACCAAAGCTTCAAGCACAATACAGAGACCCATGCAAAATCGTTCTTCTTTGCAAAATTTTGCTGTACCTGGGAAGGCCAGAAGCAAAAGGAAAAGGCTTTCAGCTCCTAGAACAAGAGACACTTTAAGCACTTGGTCACACCACATATTAGGCACACAGAGTGATGGCTTGAGTTCAGACCCTCCTCTGCTGAAACAGGCTTATTGGTTAGCTGATAGTGAACTCATTGTCCCTAAAAAGAATGATGAGCAAGAAAGGGTAGCCAAAAGTGGGGAAGTGGAGAAGGAGAACTTAGGGGATTCTGAACTTGAAATTAACAACAATGGGCAGCATTCAATTCCAAGGAGGTGCACCCATTGTTTGGCTCAGAGGACCCCACAATGGAGAGCTGGACCATTGGGTCCAAAGACACTATGTAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGTTGCCAGAGTATAGGCCAGCCAAAAGTCCTACTTTTGTAAGCTACTTGCATTCTAATTCCCACAAGAAAGTTATGGAGATGAGAATGGCTGTTCTATCTACTGATGAGCAGTAG 777 0.4492 MDMDVCRNVSLSGDCQQQLSTLDDLFSAQNTEVDFGMEWLSVFVEDCFSSKPSCLLAPASAGVENTSTTNTKASSTIQRPMQNRSSLQNFAVPGKARSKRKRLSAPRTRDTLSTWSHHILGTQSDGLSSDPPLLKQAYWLADSELIVPKKNDEQERVAKSGEVEKENLGDSELEINNNGQHSIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMAVLSTDEQ. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02149 258 SMART GATA_3 181 235 IPR000679 GO:0006355|GO:0043565
Seca10g02149 258 ProSiteProfiles GATA-type zinc finger domain profile. 181 217 IPR000679 GO:0006355|GO:0043565
Seca10g02149 258 Gene3D - 177 251 IPR013088 GO:0006355|GO:0008270
Seca10g02149 258 Pfam GATA zinc finger 187 221 IPR000679 GO:0006355|GO:0043565
Seca10g02149 258 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 183 245 - -
Seca10g02149 258 FunFam GATA transcription factor 176 258 - -
Seca10g02149 258 CDD ZnF_GATA 186 233 IPR000679 GO:0006355|GO:0043565
Seca10g02149 258 MobiDBLite consensus disorder prediction 64 92 - -
Seca10g02149 258 ProSitePatterns GATA-type zinc finger domain. 187 212 IPR000679 GO:0006355|GO:0043565
Seca10g02149 258 PANTHER GATA TRANSCRIPTION FACTOR 22 254 - -
Seca10g02149 258 MobiDBLite consensus disorder prediction 64 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02149 Seca-Chr10 24593505 24594561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02149 37 249 C2C2-Gata Transcription Factor Family AT4G32890 44.495 4.35e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca10g02149 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02149 - - pvu:PHAVU_004G079200g 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g02149 10 24593505 24594561 Seca10g02149 10 24593505 24594561 ECH
Seca10g02149 10 24593505 24594561 Seca2g03507 2 108845875 108847014 PCT