Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02147 ATGCATCAGAAGCAGGATACTCCCACATGGATATTTTGTGATAGCAAGTCTGCCATTGCACTATGCAAAAATCCAGTTTTTCATGGACAGTCCAAGCATATAGATATTCGGTTTCACAAGATCCGAGAGCTGGCTTGTGGAGCAAATGTAGAAGGGAAGAAAAGTGAAGAACTCGAGTCAGCCCTGATGAACATTGACAACAATGACCATACTGATGCTGCTGAGGAGTCAGAGGCTACAGCAGAACAACAAACTGAGAAAAAGCGTATTGTTTGGACTCCAGAGCTGCATCAAAAGTTTACAAAAGCTATAGCTTTGCTAGGAGACTTTAAAGCTCGTCCGAAAGCGATACTACGTTTAATGAATGTGCCTGACTTAACAACACGTCAGGTGTCCAGTCATCTCCAGAAATACAAATCTCAACTGAAGCAAATCCAGGATTACAGCAATTCTGATTTACATTTAATGAGTACTACAATGCCAAACTTCAGTGCCAATGCCATGACCATGTATCCCTCTCCAATTCAGAGCCAAAGTTACCCAGGTCTCCCTGCATCAACTGCTTTCTTGGATGTGAACCAAATGCAAAACCAGTTTCTGATGAACCCTGCTGAAAATCAAGAACTAGATATTCAAAATCTGCTGAAAATTGAAGGCAATCCATCCTTCACATATGAATTTCCAACAGGAGCGGCCATCAATGAAAGCCAAAGTCTGGGTTCTCTAATGGGAAACCCAATGCTAGAGGCTTCAACAGATCAAAATGAATTTGAAATAAACGATGATATCATGAAAATTCTTGATGAAGATACTTTTGGAAATGGAATAATTCCTGGTGATGTTGATGAACACAATGAGATCTTAAAGATGGTTCGTGATAGCAACCCCAATCAGTCCCCTGGAGTTTGA 909 0.4081 MHQKQDTPTWIFCDSKSAIALCKNPVFHGQSKHIDIRFHKIRELACGANVEGKKSEELESALMNIDNNDHTDAAEESEATAEQQTEKKRIVWTPELHQKFTKAIALLGDFKARPKAILRLMNVPDLTTRQVSSHLQKYKSQLKQIQDYSNSDLHLMSTTMPNFSANAMTMYPSPIQSQSYPGLPASTAFLDVNQMQNQFLMNPAENQELDIQNLLKIEGNPSFTYEFPTGAAINESQSLGSLMGNPMLEASTDQNEFEINDDIMKILDEDTFGNGIIPGDVDEHNEILKMVRDSNPNQSPGV. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02147 302 Coils Coil 67 87 - -
Seca10g02147 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 140 IPR006447 GO:0003677
Seca10g02147 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 143 IPR017930 -
Seca10g02147 302 CDD RNase_HI_RT_Ty1 1 44 - -
Seca10g02147 302 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 60 202 IPR044841 GO:0003700|GO:0006355
Seca10g02147 302 Gene3D - 84 146 - -
Seca10g02147 302 Pfam Myb-like DNA-binding domain 92 139 IPR001005 -
Seca10g02147 302 FunFam Two-component response regulator 83 146 - -
Seca10g02147 302 SUPERFAMILY Homeodomain-like 85 144 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02147 Seca-Chr10 24544719 24547067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02147 53 161 G2-like Transcription Factor Family AT5G59570 41.880 3.46e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g02147 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02147 - - aprc:113870048 164.081