Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02143 ATGTTCCCTTTAGTTTTGTTGCTTTTTCTTCTCTGCAACTCTCTTGTTGCACGTGTGAGCTCTGTCAACAGTGAAGGCTCTGCGCTTTTGACACTGAAGGAGTCCATCATCACAGACCCAGAAGGGTTTATGACTAACTGGAACTCTTCTGATGACAACCCATGTTTGTGGAATGGGATCGCATGCAAGGATCAAAGTGTTGTCTCCATTAGTATCCCAAAAAGGAAACTTTATGGGTTTCTTCCTTCTGGGCTAGGATCTCTTTCCCAGCTTCGCCATGTGAATTTGAGGAACAACAAGCTCTTTGGGAGCTTGCCTATTGAGCTCTTTGAAGCCCAGGGACTGCTAAATTTGGTGCTTCATGGCAATTCCTTTTCTGGGTCTGTTCCAAATGAGATTGGGAACCTCAGGTACCTTCAAACTCTAGATTTATCACAAAATTTCTTCAATGGGTCTTTACCTGCTACAATAGTCCAATGCAAAAGGCTCAGAACAGTTGTTCTTAGTCATAATAACTTCACCGGTCCTCTGCCAGATGGATTTGGTGGTAATTTGTCTTCTTTGGAAAAACTAGACCTTTCTTTCAATCAATTCAATGGTTCAATCCCTAGTGATATGGGAAAACTATCAAGCCTGCAAGGAACTGTTGATTTGTCTTATAATCATTTTAGTGGTTCAATCCCAGCCACCCTTGGTAATCTTCCTGAGAAGGTTTACATTGATCTTTCTTACAATAACTTAAGTGGTCCAATACCCCAAACTGGTGCATTAATTAATAGAGGACCAACAGCTTTTATTGGCAATTCTGATCTATGTGGCCCCCCTTTGAAGAATCTATGTGCTAATTCACCTTCCTCACTTCCATCTTTGCCTGATAATAACCCATCTCAGGATAGTGATAATGGTTTTGGGAAAAGTGAGAAAAGCAAAGGGCTGAGTAAAGGTGCTGTGGCTGGCATTGTTGTGGGAGATGTAATTGGAATTTGCCTTATAGGTTTGCTATTCTCTTATTTCTACTCAAGGGTTTGTGGTTTTAATGAGGAACAGGATGAAAATGGTTTTGACAAAGGTGGGAGACAGAGGAAGGAGTGTTTATGCTTCAGAAAGGATGAGTCTGAGACGCTATCTGATCATGTTGAGCAATATGATCTTGTCCCATTAGATGCTCGAGTGGCTTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTCTGGGAAAGAGTGGAATAGGGATTGTCTACAAAGTGGTGCTTGAAGATGGGCTTACCTTGGCTGTGAGAAGATTGGGAGAGGGAGGTTCTCAAAGGTTTAAAGAGTTTCAAACAGAAGTTGAAGCAATAGGAAAGTTAAGGCATCCAAATATTGTTACTCTGAGAGCCTATTACTGGTCTGTTGATGAGAAGCTTCTCATCTATGATTATATTCCCAATGGAAGCCTTGCTGCAGCAATTCATGGGAAGGCTGGACTTGTCACATTTACACCACTTTCTTGGTCTGATAGAATGAAAATCATGAAAGGAATTGCCAAAGGATTGGTCTACTTGCATGAATTTAGTCCAAAAAAATATGTCCATGGAGACCTGAAGCCAAGTAACATACTTCTAGGACATAGCATGGAACCCCATATTTCTGATTTTGGTCTTGGACGCCTTGCAAATATTGCTGGAGGGTCTCCAACCTTGCAATCTAACCGAGTGGCTGCAGAGAAACCCCAAGAAAGACAAAAGAGCTTATCAACAGAAGTTACAACAAACATTTTGGGAAATGGTTATCAAGCTCCAGAAACAATGAAAATGGTGAAACCATCACAGAAGTGGGATGTTTATTCATATGGTGTGATTTTGCTAGAAATGATTACAGGAAGATTGGCAATTGTCCATGTGGGTAACTCTGAAATAGACCTTGTTCAATGGATTCAGTTCTGCATTGATGAGAAGAAACCACTCTCAGATGTATTAGATCCATATTTAGCTGAAGATGCAGATAAGGAAGAAGAGATTATTGCAGTTTTGAAGATTGCAATTGCTTGTATCCATAGCAGCCCTGAAAAGAGACCTATAATGAGGCATGTGCTTGATACTTTGAATAGATTGTCCATATCCTCTGATTGA 2115 0.4066 MFPLVLLLFLLCNSLVARVSSVNSEGSALLTLKESIITDPEGFMTNWNSSDDNPCLWNGIACKDQSVVSISIPKRKLYGFLPSGLGSLSQLRHVNLRNNKLFGSLPIELFEAQGLLNLVLHGNSFSGSVPNEIGNLRYLQTLDLSQNFFNGSLPATIVQCKRLRTVVLSHNNFTGPLPDGFGGNLSSLEKLDLSFNQFNGSIPSDMGKLSSLQGTVDLSYNHFSGSIPATLGNLPEKVYIDLSYNNLSGPIPQTGALINRGPTAFIGNSDLCGPPLKNLCANSPSSLPSLPDNNPSQDSDNGFGKSEKSKGLSKGAVAGIVVGDVIGICLIGLLFSYFYSRVCGFNEEQDENGFDKGGRQRKECLCFRKDESETLSDHVEQYDLVPLDARVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGSQRFKEFQTEVEAIGKLRHPNIVTLRAYYWSVDEKLLIYDYIPNGSLAAAIHGKAGLVTFTPLSWSDRMKIMKGIAKGLVYLHEFSPKKYVHGDLKPSNILLGHSMEPHISDFGLGRLANIAGGSPTLQSNRVAAEKPQERQKSLSTEVTTNILGNGYQAPETMKMVKPSQKWDVYSYGVILLEMITGRLAIVHVGNSEIDLVQWIQFCIDEKKPLSDVLDPYLAEDADKEEEIIAVLKIAIACIHSSPEKRPIMRHVLDTLNRLSISSD. 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02143 704 Gene3D Phosphorylase Kinase; domain 1 370 475 - -
Seca10g02143 704 Pfam Leucine rich repeat 162 222 IPR001611 GO:0005515
Seca10g02143 704 CDD STKc_IRAK 406 699 - -
Seca10g02143 704 MobiDBLite consensus disorder prediction 283 302 - -
Seca10g02143 704 MobiDBLite consensus disorder prediction 283 310 - -
Seca10g02143 704 FunFam Leucine-rich repeat receptor-like protein kinase 383 475 - -
Seca10g02143 704 Gene3D Transferase(Phosphotransferase) domain 1 476 703 - -
Seca10g02143 704 SUPERFAMILY Protein kinase-like (PK-like) 405 696 IPR011009 -
Seca10g02143 704 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 160 700 IPR046959 -
Seca10g02143 704 SMART serkin_6 405 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02143 704 SUPERFAMILY L domain-like 24 277 - -
Seca10g02143 704 Pfam Protein kinase domain 406 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02143 704 Gene3D Ribonuclease Inhibitor 79 283 IPR032675 -
Seca10g02143 704 FunFam Leucine-rich repeat receptor-like protein kinase 187 282 - -
Seca10g02143 704 Gene3D Ribonuclease Inhibitor 18 78 IPR032675 -
Seca10g02143 704 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Seca10g02143 704 ProSiteProfiles Protein kinase domain profile. 400 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02143 704 SMART LRR_typ_2 136 160 IPR003591 -
Seca10g02143 704 SMART LRR_typ_2 185 209 IPR003591 -
Seca10g02143 704 SMART LRR_typ_2 88 112 IPR003591 -
Seca10g02143 704 FunFam Leucine-rich repeat protein kinase family protein 476 702 - -
Seca10g02143 704 FunFam Leucine-rich repeat receptor-like protein kinase 22 179 - -
Seca10g02143 704 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02143 Seca-Chr10 24502627 24505477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02143 4 704 Receptor kinase-like Gene Family AT2G01210 68.112 0.0 990
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca10g02143 Pkinase 3.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02143 - - gmx:100810225 1174.84