Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02142 ATGGTTTCAAGGTCATATTCTAACTTGTTGGATCTTACTTCCTGTGACTCTCCAACTTTTGGTCGTGAAAAGAAAAGGCTTCCTCGTGTGGCCACTGTTGCTGGAGTACTGTCTGAACTAGATGATGATAACAACAGCAACAGTGCTGGTTCTGATGCTCCCTCTTCAATTACTCAAGATAGGATGATTATTGTAGGTAACCAGCTTCCATTACGGGCACATAGGAAAGATAATGGTACATGGGACTTTACCTGGGATGAGGACTCGCTTCTTTTACAGCTAAAAGATGGTCTTGGGGAGGATGTGGAAGTTATCTATATTGGTTGTCTCAGAGAAGAAATTGAGCCAGATGAGCAAGATGATGTTGCTCAATACTTACTTGACAATTTCAAATGTGTACCCACATTCCTTCCTACTGAGCTTTTTAGTAAATTCTATCATGGATTCTGCAAACAACATCTATGGCCTTTATTTCATTACATGCTTCCCTTATCACCTGATCTCGGTGGTCGATTTGATAGGTCCCTTTGGCAAGCTTATGTTTCTGTGAACAAGATATTTGCAGACAAAGTGATGGAAGTTATTAGCCCTGATGATGACTTTGTGTGGGTTCATGACTACCATTTGATGGTTCTCCCAACATTTTTGAGAAAGAGATTTAACAGGGTGAGGCTAGGATTCTTCCTCCATAGTCCATTCCCTTCCTCTGAGATATATCGAACACTTCCTGTTAGGGATGAACTTCTCAGAGCTCTTCTGAACTCTGACCTTATTGGATTTCATACTTTTGATTATGCCAGACACTTCCTCTCCTGTTGCAGTAGAATGCTTGGACTTTCTTATCAGTCCAAGCGTGGCTACATTGGTCTTGAGTACTATGGTAGAACTGTTAGTATTAAGATTCTTCCTGTTGGTATTCATATAGTACAGCTTCAATCTGTCATGAATCTTCCTGAGACAGAAAGAAAGGTTGCAGAGTTAAAGGACCAGTTCAAAGGTCAAACTGTGATTCTTGGGGTTGATGACATGGATATCTTTAAAGGAATCAGCTTAAAACTTTTAGCTATGGAACAATTGCTTTTACAACACCCTGATAAGAGGGGCCAAGTTGTTCTGGTCCAAATTGCAAACCCTGCAAGAGGCCGAGGGAAGGATGTCCAGGAGGTGCAAATTGAAACTTATGCCACAGTGAAAAGGATAAATGGTACATTTGGAAGGCCTGGATATACACCTGTAATCTTGATTGATACACCCCTTCAATCTTATGAGCGAATTGCTTATTATGTGATTGCAGAATGTTGTCTTGTTACAGCAGTGAGAGATGGGATGAACCTTATACCCTATGAATACATCATATGTAGACAAGGAAGTGAGAAGCTAGATGAGATTTTAGAGATAAACCCGTTTACACAGAAAAAGAGCATGCTGGTTGTGTCTGAGTTCATTGGGTGCTCCCCATCACTAAGTGGGGCAATTCGAGTCAATCCATGGAACATTGATGCTGTTTCTGAAGCTATGGATACTGCCTTAATGGTTCCAGGGTCTGAAAAACAGATGCGGCATGAGAAGCATTATAAGTACGTTAGCACACATGATGTTGCATATTGGGCACGTAGCTTCTTGCAGGATCTGGAAAGGGCATGTAGGGATCATCTCAGGAGGAGATGCTGGGGGATTGGTTTTGGTTTAGGATTTCGAGTAATTGCTTTGGACCCAAATTTTAGAAAATTATCAGTGGAGCATATTGTTTCAGCTTATAAGAGGACCAAGCACCGAGCAATTCTGTTGGATTATGATGGTACCATGATGCAACCTGGATCAATTAGCACAGCACCTAATGCTGAAGCTGTATCCATCTTGAACAGCTTGTGCAGGGACACCAAGAATGTCGTTTTCCTTGTCAGTGGAAAGGATAGGAAGATACTTACTGAATGGTTTTCTTCATGTGAAAGTCTGGGAATTGCTGCAGAGCATGGTTTTCTTGTTAGGACGAATCGCAATGCAGAATGGGAAACTTGTGTTTCTGTCCCAGATTTTGACTGGAAACAGATTGCTGAGCCAGTAATGCAGTTATACATGGAAACAACTGATGGTTCTAACATAGAGGCCAAAGAGAGTGCTCTCGTTTGGAATTATGAGTATGCAGACCGAGACTTTGGTTCATGCCAGGCTAAGGAGCTTTTAGATCATCTTGAAAGTGTTCTTGCTAATGAGCCTGTTTCTGTTAAAAGTAGTTCACACGTTGTGGAAGTTAAACCTCAGGGTGTGAACAAGGGTATTGCTGCAGAACATCTTCTCTTAACAATGCAACAAAAGGGAGTGATTCCAGATTTTGTTCTATGCATTGGAGATGACAGATCAGATGAGGACATGTTTGAGGTAATAACAAGTGCAAAGGCCTCTTTTTCTCCGGTTGCCGAAGTGTTTCCTTGCACTGTTGGGCAGAAACCTAGTAAAGCAAAGTATTACCTGGAAGACCCAAGTGAGATTTTGAGAATGTTGCAAGGCCTTGCCAATGCTTCTGAGCAGTCTGCAAGAAGTTCTCCCTAG 2550 0.4173 MVSRSYSNLLDLTSCDSPTFGREKKRLPRVATVAGVLSELDDDNNSNSAGSDAPSSITQDRMIIVGNQLPLRAHRKDNGTWDFTWDEDSLLLQLKDGLGEDVEVIYIGCLREEIEPDEQDDVAQYLLDNFKCVPTFLPTELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVRLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIVQLQSVMNLPETERKVAELKDQFKGQTVILGVDDMDIFKGISLKLLAMEQLLLQHPDKRGQVVLVQIANPARGRGKDVQEVQIETYATVKRINGTFGRPGYTPVILIDTPLQSYERIAYYVIAECCLVTAVRDGMNLIPYEYIICRQGSEKLDEILEINPFTQKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVSEAMDTALMVPGSEKQMRHEKHYKYVSTHDVAYWARSFLQDLERACRDHLRRRCWGIGFGLGFRVIALDPNFRKLSVEHIVSAYKRTKHRAILLDYDGTMMQPGSISTAPNAEAVSILNSLCRDTKNVVFLVSGKDRKILTEWFSSCESLGIAAEHGFLVRTNRNAEWETCVSVPDFDWKQIAEPVMQLYMETTDGSNIEAKESALVWNYEYADRDFGSCQAKELLDHLESVLANEPVSVKSSSHVVEVKPQGVNKGIAAEHLLLTMQQKGVIPDFVLCIGDDRSDEDMFEVITSAKASFSPVAEVFPCTVGQKPSKAKYYLEDPSEILRMLQGLANASEQSARSSP. 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02142 849 FunFam Alpha,alpha-trehalose-phosphate synthase 314 529 - -
Seca10g02142 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 312 - -
Seca10g02142 849 NCBIfam HAD-IIB family hydrolase 594 795 IPR006379 -
Seca10g02142 849 SUPERFAMILY HAD-like 592 838 IPR036412 -
Seca10g02142 849 Gene3D - 717 848 IPR023214 -
Seca10g02142 849 Gene3D - 591 708 IPR023214 -
Seca10g02142 849 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 34 839 IPR001830 GO:0003824|GO:0005992
Seca10g02142 849 NCBIfam trehalose-phosphatase 590 838 IPR003337 GO:0003824|GO:0005992
Seca10g02142 849 Gene3D Glycogen Phosphorylase B; 54 312 - -
Seca10g02142 849 FunFam Trehalose-6-phosphate synthase 2 675 754 - -
Seca10g02142 849 Gene3D Glycogen Phosphorylase B; 313 529 - -
Seca10g02142 849 Pfam Glycosyltransferase family 20 61 545 IPR001830 GO:0003824|GO:0005992
Seca10g02142 849 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 61 549 - -
Seca10g02142 849 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 591 708 - -
Seca10g02142 849 CDD HAD_TPP 593 829 - -
Seca10g02142 849 CDD GT20_TPS 61 545 IPR001830 GO:0003824|GO:0005992
Seca10g02142 849 Pfam Trehalose-phosphatase 595 828 IPR003337 GO:0003824|GO:0005992
Seca10g02142 849 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 721 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02142 Seca-Chr10 24493496 24498133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02142 1 838 Trehalose Biosynthesis Gene Families AT4G17770 79.762 0.0 1430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02142 K16055 - gmx:100782799 1555.04