Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02130 ATGCAGCCTAGATGGCGGGTAGGCCAGTCGAGATGGCTGAATAGGCCAGCCAAGATGGCTGAGGTAGGCCAATCGAGATGGTTGTATGATAAGCCAGTCGAGATGGCTGATAGGTCAGCCGAGATGGCTGAGACCAGTCGAGCTAGTTCCGAGTTAACCTCTGGATCAAAAAACAAACTAGGCCAAGGTGGTTATGGAAGAGTGTACAAAGGAAAGCTGCCTGATGGAAGACTTGTTGCAGTGAAAGTTCTAGACAAGTTGAAAGGAAATGGTGAAGAACTCATCAATGAAGTTGCTAGTATGAGCCAAACTTCTCATGTTAATGTAGTTAGTCTCTTTGGATTCTGTTTTCAAGGTTCAGAAAGAGCTCTAGTTTATGAGTTCATGCCTAATGGATCTCTTGAAAAGTTTATATATGAAGATAATGCTGCAATGGTTGGTCGCCATTTGGATTGCAAAACTCTGCATGATATTGCAATTGGTACTGCAAGAGGTTTGGAGTACTTACATAGAGGTTGTGACACTCGGATCTTGCATTTTGACATCAAGCCTCACAATATATTGCTTGATGTGGATTTCTGTCCAAAGATTTCTGATTTTGGGCTAGCAAAAATATGCCCAAGAAAGGAGAGTATTGTGTCCATGTTGGGTGCCAGAGGAACTGCAGGGTATATTGCTCCTGAGGTGTTTTCCAGAAATTTTGGTGGTGTATCTCATAAGTCAGATGTCTATAGTTTTGGAATGATGGTCTTAGAAATGGTTGGAGGAAGAAAGAATATTAATGTGGAAGTTGAGTGTTCTAGTGAAATATATTTTCCACATTGGATTTACAAGTGTTTGGAAAAAAATCAACAACTTGCACTGCGGTGTATTAAAAATGAAAATGATAATGAGATGGTAAGGAAGATAATTTTGGTAAGCTTGTGGTGCATACAAACTGATCCTTCTGCTCGGCCAGCAATGAGTACAGTGGTAGATATGTTGGAAGGAAGCCTTGAGTCATTGCAAATACCTCCTAAACCTTTCTTATCTTCACCAAAATCATCACCAGCCCATTACTCAACTTCAACCTGTGAGACTGTCAGTGTGATTACATAG 1098 0.4089 MQPRWRVGQSRWLNRPAKMAEVGQSRWLYDKPVEMADRSAEMAETSRASSELTSGSKNKLGQGGYGRVYKGKLPDGRLVAVKVLDKLKGNGEELINEVASMSQTSHVNVVSLFGFCFQGSERALVYEFMPNGSLEKFIYEDNAAMVGRHLDCKTLHDIAIGTARGLEYLHRGCDTRILHFDIKPHNILLDVDFCPKISDFGLAKICPRKESIVSMLGARGTAGYIAPEVFSRNFGGVSHKSDVYSFGMMVLEMVGGRKNINVEVECSSEIYFPHWIYKCLEKNQQLALRCIKNENDNEMVRKIILVSLWCIQTDPSARPAMSTVVDMLEGSLESLQIPPKPFLSSPKSSPAHYSTSTCETVSVIT. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02130 365 FunFam PR5-like receptor kinase 129 340 - -
Seca10g02130 365 ProSitePatterns Protein kinases ATP-binding region signature. 60 82 IPR017441 GO:0005524
Seca10g02130 365 MobiDBLite consensus disorder prediction 39 59 - -
Seca10g02130 365 Gene3D Transferase(Phosphotransferase) domain 1 129 337 - -
Seca10g02130 365 Pfam Protein kinase domain 57 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02130 365 ProSiteProfiles Protein kinase domain profile. 54 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02130 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Seca10g02130 365 PANTHER RUST RESISTANCE KINASE LR10-RELATED 47 348 IPR045874 GO:0004672
Seca10g02130 365 Gene3D Phosphorylase Kinase; domain 1 31 128 - -
Seca10g02130 365 SUPERFAMILY Protein kinase-like (PK-like) 57 329 IPR011009 -
Seca10g02130 365 SMART serkin_6 54 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02130 365 Coils Coil 84 104 - -
Seca10g02130 365 PIRSF ILK 23 336 - -
Seca10g02130 365 MobiDBLite consensus disorder prediction 43 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02130 Seca-Chr10 24384767 24385968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02130 51 344 Receptor kinase-like Gene Family AT4G18250 59.272 2.81e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g02130 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02130 - - mtr:11418569 473.396