Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02129 ATGGTTCCAGCTCATGTATTTTGCACCCTCTTGTTTTCTACCTTTGTGCAGCTTGTCTCCACTGCAAATGCCAAGTGTCCACCTTCGTTTGATTGTGGGAACCTTGGCAAGATCCATTTTCCTTTCACTGATGCAGAGCACCCTGAGTGTGGCTTGTTGGCAATACATGGTTGTAATGACCGTTACCCTGACGCAGTTAAAACCATTAGGAACCAAGGAACATGGTTTTATGTTGTCGAACTAGACCAGTTTACCATTGTCGTTAGAGATGATGATCTCCATTCCCTTTTGTTATCAAGAAGATGTGGTGTCTTCAATAAGAACTACACTTTTGATACCACTTCTCCTTTCTTTTCCCTTCACTTCTTAAAAGTCACTCTTTTCAGCTGCAACAGCACCCTCAATGTCACCCCACCTGCAACCATTTCAAAATCTACTATATGCTCAAATGACATCTTCTATGATGCAGCTACTATGGAAGATGAATTCCTAAGTTCCAAGGACTATAATCTGTATTTTGCATCATGTTCAATGGTTCAGCTTCCAATAAGAGACACAGGTCTCAAGCCTGATCCCAAAGGAGATCTCTTTGATTTTATATCAGCTGACATTCCTATCCAAATTCAGATATCCCCTGCTTGTTCTTCGTGTTACTATCTCAGAGGAGGCCAGTGTCAACTTGACAACCAAGGGAAGTTCTTTTGTGCCCAAGAAAAAACGGGTAAAAAGATGAAGAAAGTGGTAGCAGCTGCTTCAGTTGCTGGAGCACTTGGAGTTTTGATGGTCTTGGCTTGCATCATACGAAGATATTATTGGCACAGGGAAAATCCCACCTACCGAATGATTGAGGCTTTCCTGAAGCAACATGGACACCTTTCAGCCAAAAGGTACAGCTATTTGGAGGTAAAAAAAATGACCAACAAATTCAAAAACAAATTAGGCCAAGGAGGATATGGCAGTGTATACAAAGGGAGGTTACATAATGGAAGTCTTGTGGCAGTGAAGATTTTAAGTAAATTACAAGGTAATGGAGAAGAATTCATTAATGAAGTTGCTAGTATTAGCATGACTTCTCATGTTAACATTGTCAATTTACTGGGATTTTGTTTGGAAGGATCTAAAAGAGTTCTCATATATGAGTACATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGAGAGAGATCCTTTAAGGCTTAATCTGACATTGAATTGCACAACTATGTACAATATTGCTATTGGTGTTGCTCGAGGATTGGAGTATTTGCACAAAGGTTGCAACACTAAAATTGTGCATTTTGACATAAAACCTCACAACATACTGCTAGATGAGTTGTTTTGCCCAAAAATATCAGATTTTGGGCTTGCTAAAATATGCCCAAAAGAAAAAAGTACTCTATCAATGATGGTTGCAAGGGGAACTGTAGGGTATATTGCTCCTGAGGTGTTCTGCAGAAATTTTGGTGGAGTGTCTCATAAATCAGATGTCTACAGTTATGGAATGATGGTTTTTGAAATGCTTGGCACAGGAGAGAATATTAATGACAGAGCTGAATTTTCAAGTGATAAATACTTTCCACATTGGATTTACAACCATCTTGAATTGAATCAAGAGCTTCAATTGCGATGTATTAAAAACCAAAATGATATAGAGATGGTGAGAAAAATGATAATAGTGAGTTTGTGGTGCATACAGGCTGACCCTTCCAATCGACCCACAATGAGTAGAGTGGTGGAAATGATGGAAGGAAGCATTAACTCATTGCAAGTACCACCTAAACCTTTCTATTCTCTATTCTCTTCATCTTCATTCCTTGAATCTCAAACAAGTGAGACTTCATAG 1845 0.3897 MVPAHVFCTLLFSTFVQLVSTANAKCPPSFDCGNLGKIHFPFTDAEHPECGLLAIHGCNDRYPDAVKTIRNQGTWFYVVELDQFTIVVRDDDLHSLLLSRRCGVFNKNYTFDTTSPFFSLHFLKVTLFSCNSTLNVTPPATISKSTICSNDIFYDAATMEDEFLSSKDYNLYFASCSMVQLPIRDTGLKPDPKGDLFDFISADIPIQIQISPACSSCYYLRGGQCQLDNQGKFFCAQEKTGKKMKKVVAAASVAGALGVLMVLACIIRRYYWHRENPTYRMIEAFLKQHGHLSAKRYSYLEVKKMTNKFKNKLGQGGYGSVYKGRLHNGSLVAVKILSKLQGNGEEFINEVASISMTSHVNIVNLLGFCLEGSKRVLIYEYMPNGSLEKFIYEERDPLRLNLTLNCTTMYNIAIGVARGLEYLHKGCNTKIVHFDIKPHNILLDELFCPKISDFGLAKICPKEKSTLSMMVARGTVGYIAPEVFCRNFGGVSHKSDVYSYGMMVFEMLGTGENINDRAEFSSDKYFPHWIYNHLELNQELQLRCIKNQNDIEMVRKMIIVSLWCIQADPSNRPTMSRVVEMMEGSINSLQVPPKPFYSLFSSSSFLESQTSETS. 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02129 614 FunFam serine/threonine-protein kinase PBS1-like 280 381 - -
Seca10g02129 614 SMART serkin_6 307 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02129 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Seca10g02129 614 ProSiteProfiles Protein kinase domain profile. 307 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02129 614 SUPERFAMILY Protein kinase-like (PK-like) 290 582 IPR011009 -
Seca10g02129 614 Pfam Protein kinase domain 309 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02129 614 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Seca10g02129 614 Gene3D Transferase(Phosphotransferase) domain 1 382 591 - -
Seca10g02129 614 PANTHER RUST RESISTANCE KINASE LR10-RELATED 279 604 IPR045874 GO:0004672
Seca10g02129 614 Gene3D Phosphorylase Kinase; domain 1 283 381 - -
Seca10g02129 614 FunFam PR5-like receptor kinase 382 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02129 Seca-Chr10 24381594 24383791 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02129 19 595 Receptor kinase-like Gene Family AT5G38260 38.796 2.32e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca10g02129 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02129 - - gmx:100807312 903.664