Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02124 ATGCTAACACCACCTTCTCTTTCCATCTTCTCCTTAACCTTCCACTTCCTTTTCCTCCTTCTACAAGCCTCCAACAGCCCAGACTTCCAACCCCTCATGGCCTTCAAAACCGATTCCGACACTAACAACAAACTCACCACATGGAACTCCACCACCCACCCATGCACCTGGCACGGTGTCTCCTGTCTCAGGAACCGCGTCTCTCGCCTTGTCCTCCAAGACCTCGACCTCCACGGCTCCATCCAACCCTTAACCTCTCTCACTAACCTCCGACTCCTCAGCCTTAAACGCAACCGTTTTAACGGTCCCATTCCCAACCTCTCCAATCTCACCGCCTTAAGGCTCCTCTTCCTCTCTCACAACAACTTCTCCGGCGAGTTCCCCTCATCGCTCACGTCCCTCACCCGCCTCTACCGTCTCGATCTGTCCCACAACAACCTCTCCGGCGAGATTCCGGCCACGGTCAACCGTTTGACCCACCTTCTCACTCTCCGCGTTGACCAGAACCAAATCCAAGGCCACATTCCGGACTTAAACCTCTCTTATCTTCAAGACTTCAACGTCTCCGGTAACCACCTATCGGGTCGAATACCGGAAACCCTCTCGGGTTTTCCCGGATCCGCTTTCGAGCAAAACCCGTCTCTCTGTGGAGCCCCATTGCAGAAATGCAAAGACGTCCCTGCACTTGCTACACCATTGGTTCCTACCCCAGCAACAACAACTGTGCCATCTTCTCCGAGTTCAATGCCGGAAAACGAATCGGTACCCGGAAACAAGACCCGAAAAAACGGAGCTCCGAAAATGGGGCCGGTGGTTTTAATCGCGATTGTCCTCGGCGATGTTTCAGTGCTCGCCGTGGTTTCAGTGCTTCTCTACTGCTACTTCTGGCGAAACTACAATGCTGAGTTCAGGGAAGTGAAAGCAGGGTCGTCGAATTCAAAGCGTGTGGAGGGTGAAAAGATGGTTTATACTTCGAGTGTTTCTGCTGGGCAACAGGGTTTGGAGAAGGGTAGAATGGTGTTCTTTGAAGGGGTGAAGAGGTTTGAGCTAGAGGACTTGTTGCGTGCCTCTGCGGAAATGCTGGGGAAGGGTGGGTTTGGCACAGCTTACAAGGCTGTTCTTGATGATGGAACAGTTGTTGCTGTGAAGAGGCTCAAGGAGGTTCAAATTGGAGGGAAGAGGGAGTTTGAGCAGCGAATGGAAATGCTGGGAAGGTTAAGAAACCCCAACATTGTTAGCTTAAGAGCTTACTATTTTGCAAGGGATGAGAAATTGCTTGTCTGTGATTACATGCCTAATGGTAGCTTGTTCTGGCTCCTTCACGGTAGCCGAGGACCCGGGAGAACCCCACTGGACTGGACCACGAGGCTGAAAATAGCAGCTGGAGCGGCACGAGGTGTGGCTTTCATTCACAACTCGTGCAAGTCCCATAACCATAATAATAATATCACCCACGGTAACATCAAATCCACAAACATACTCGTTGACGTGGCGGGAAATGCACGCGTGGCGGATTTTGGGCTCTCCATCTTCGCGGGCCCATCAAGCGGAAGATCCAATGGCTACCGCGCTCCGGAGGTATCGGACGGTCGAAAACAGTCCCAGAAGGCTGATGTGTACTCCTTTGGCGTTCTTCTCATGGAGATGCTGACGGGGAAGTGCCCATCCGCCGTGGACGGCGGCGGCACGGCGGTGGACCTCCCTAGGTGGGTCCAGTCTGTGGTGAGGGAGGAATGGACCGCTGAGGTGTTTGATCTTGAGCTGATGAGGTACAAGGATATTGAGGAGGAAATGGTGGCGCTGCTTCAGATAGCTATGGCGTGCACTGCGACTGCACCTGATCAACGGCCCAGGATGAGCCACGTGGTCAAGATGATAGAGGAGTTGCGTGGGGTCCAAGTGTCACCGTGTCATGACACGTTGGACTCGGTGTCTGAGTCACCTTCCGTGTCTGAAGATGCACGTGGAGGTGGAGCTAGCGTTTCTACCGACTAG 1995 0.5323 MLTPPSLSIFSLTFHFLFLLLQASNSPDFQPLMAFKTDSDTNNKLTTWNSTTHPCTWHGVSCLRNRVSRLVLQDLDLHGSIQPLTSLTNLRLLSLKRNRFNGPIPNLSNLTALRLLFLSHNNFSGEFPSSLTSLTRLYRLDLSHNNLSGEIPATVNRLTHLLTLRVDQNQIQGHIPDLNLSYLQDFNVSGNHLSGRIPETLSGFPGSAFEQNPSLCGAPLQKCKDVPALATPLVPTPATTTVPSSPSSMPENESVPGNKTRKNGAPKMGPVVLIAIVLGDVSVLAVVSVLLYCYFWRNYNAEFREVKAGSSNSKRVEGEKMVYTSSVSAGQQGLEKGRMVFFEGVKRFELEDLLRASAEMLGKGGFGTAYKAVLDDGTVVAVKRLKEVQIGGKREFEQRMEMLGRLRNPNIVSLRAYYFARDEKLLVCDYMPNGSLFWLLHGSRGPGRTPLDWTTRLKIAAGAARGVAFIHNSCKSHNHNNNITHGNIKSTNILVDVAGNARVADFGLSIFAGPSSGRSNGYRAPEVSDGRKQSQKADVYSFGVLLMEMLTGKCPSAVDGGGTAVDLPRWVQSVVREEWTAEVFDLELMRYKDIEEEMVALLQIAMACTATAPDQRPRMSHVVKMIEELRGVQVSPCHDTLDSVSESPSVSEDARGGGASVSTD. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02124 664 CDD STKc_IRAK 361 629 - -
Seca10g02124 664 MobiDBLite consensus disorder prediction 235 259 - -
Seca10g02124 664 SUPERFAMILY L domain-like 43 204 - -
Seca10g02124 664 Gene3D Transferase(Phosphotransferase) domain 1 431 644 - -
Seca10g02124 664 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 16 631 IPR046959 -
Seca10g02124 664 Gene3D Ribonuclease Inhibitor 112 225 IPR032675 -
Seca10g02124 664 Pfam Protein kinase domain 359 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02124 664 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Seca10g02124 664 MobiDBLite consensus disorder prediction 235 263 - -
Seca10g02124 664 FunFam pollen receptor-like kinase 1 325 430 - -
Seca10g02124 664 ProSiteProfiles Protein kinase domain profile. 355 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g02124 664 FunFam Nuclear pore complex protein NUP107 26 177 - -
Seca10g02124 664 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 431 636 - -
Seca10g02124 664 MobiDBLite consensus disorder prediction 637 664 - -
Seca10g02124 664 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Seca10g02124 664 SUPERFAMILY Protein kinase-like (PK-like) 359 626 IPR011009 -
Seca10g02124 664 Gene3D Phosphorylase Kinase; domain 1 324 430 - -
Seca10g02124 664 MobiDBLite consensus disorder prediction 638 664 - -
Seca10g02124 664 Gene3D Ribonuclease Inhibitor 21 111 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02124 Seca-Chr10 24350217 24353163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02124 28 660 Receptor kinase-like Gene Family AT1G68400 63.231 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca10g02124 Pkinase 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02124 - - cam:105851082 880.167