Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02122 ATGGCCACCACGCAAGCTAGTGGTGGCAGCGGCGGCGGCGTTGCCATAATGCCAGGCACTGTAACCTCCACGGATCCTTCCACTTCGAGCACTTGCTCCAACACCTCCCTCCTCCTCCAATCGCCGATTCTCATATTCTCTCTGTTCCACAAAGCCATTAACTCTGAGCTCCAGTCCCTTCACCAAGCCGCCTTGGATTTCGTTTCCAACCACGATGATCCCTCTGACCTAAAATCCTTGTCCCACCGCTGTCACTTTCTTCGCACCATCTATAAGCACCACTGTAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTTGCAAGCGCGTATTTTTTGGAACATGAGGGGGAGGGTCTTCTTTTCAATCAGTTGTTCGAGCTGCTAAATTCCAATTTGCTAAATGAAGAGAGCTATCGAAGAGAATTAGCTTCTTGTACTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAACAGGTCTTCCCTTTGGTCATTGAGAAATTTTCATCTGAAGAGCAGGCATCATTAGTATGGCAATTTCTTTGTAGCATACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATATATATCATCTGATGAGCATCAGGAACTACTTAGGTGCTTGTGCACTATTATTCCCAAAGAGAAGCTCCTTCATCAGGTCATCTTTGGATGGATGGAGGGACTAAACATTAAATGCACAAACTGCACGCATGATACTAAGGTTCAATGGCAGGATGCTGGAACAAGCAATTTACCCAGTCATAATAATGAAAAGGAGTACTGTGACTGTGGACCTTCCAAAACTGTCAAAAGGAAATGGGTGGAGCTAAGTGAAGATCCTAACAATTCCACTTTATCATGTCCTTTAGATGAATTATTACTTTGGCATAAGGCTATAAAGCAAGAATTGAGTGATTTAGCTGAGACAGCTAGGAAGATGGACCTATCTGAAGAATTTTCTGACTTGTCTTCATTTAATGGGAGGCTTCAATTTATAACTGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTTCCCGCTATAAATTCAGAGCTGTATTTTTTCCAAAACCACACAAATGAAGAACTCCAATTTGACAATCTGAGGTGCCTGATAGAAGGTATCCAAAGTGCTGGAGCCAACCCCTCCTCCCCTGAGTTTTATATTAGGTTGAGCTCCCATACTGAACAAATAATGAAAACCGTACTGAAGCACTTTGAAAATGAGGAAGCTCAGGTTCTTCCACTTGCACGAAAGCTATTTAGCCACCAAAGGCAACGAGAATTACTTTATGAAAGCTTGTGCTTGATGCCCTTGAAATTGATCGAAAGCGTATTACCATGGCTAGTAGGATCACTTAGTGAAACAGAAGTTAGGTCGTTTCTTCAGAATATGTATATGGCAGCCCCAGCTTCAGATCATGCATTGGTTACCCTTTTTTCTGGTTGGGCATGCAACAGACATTCCAGAAACAGTTGCTTCTCTTCAAGTGTGATAGGTTTATGTCCTGCCAGGAGATTGATGGAGACGGAAAGCACTAGCCTATCATTTTGCATGTGTGAACCTTCATTCAGTCCCAATGAAAAATCTTCGCACGTTAAACAAGATGATGCAAATAGCGACATTGGACCAGTCAAGCATGGAAATCCAGAACCAAAGCAAGACAATGATGCTTCTAACTTGATGGTAACAAGAGAAACTCTTAACTCACCTAATAATCAGTCTTGCTGTGTCCCTGGATTAGGGGTGAACAGAAATCATCTAGGAGGTGGTTCTTTTTCCCTAACAAAGTCTCTGCGAGCCTTATCTGATTGTCCATCTGCACCTTTCCTCAATTCCAGTCTTTTTATGTGGGAAACTGATGTAGTCTCTGTTGACAATCAATTTACAACAAGGCCTATTGATAACATATTTAAATTTCACAAAGCCATCCGTAAAGACTTGGAATATTTAGATGTTGAATCCGGAAAACTTAATGATTGTGATGATATTTTCATTCAGCAATTCACTGGTAGATTGTGCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGAATTAGAGTCAAAAGAGAATCTTCACAATGTGAGTCATTCTTACACTTTGGACCACCAGCAGGAAGATAAGTTATTTTTGGATATTTCTTCTGGACTCACTCAGCTTACTCGATTACATGAATTACTAAATAAAAGGATTTCGTCTGACCATCTAACCAACTGTTACTCTAATTATTCTGATTGCTCTGATACCATACAAAATTACAACGAGCTCTCTACAAAGATTCAGGGCATGTGCAAGTCTATCAGAGTGACACTAGATCAGCATCTTCTTAGGGAGGAACTTGAATTATGGCCCTTGTTTGATAAACACTTTTCTGTGGAAGAACAAGATAAGATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGTTGCCATGGGTAACTACTGCTCTCACACAAGATGAGCAAAACAAAATGATAGACACATGGAAACAGGCTACGAAAAACACTATGTTCAATGAGTGGCTTAATGAATGGTGGGAAGGACCTGCTTCATCTTTAAATATCACTACACCTCGAGACCATTCACCAGGTGCTGATGCCTATGAAGACTCAGAGCATAGCTTTCAAGCCTTCAGGCCTGGATGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGAAAAACATATCTAATTCAAAATCTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGGAGGTGAATCTTCTAAAGGAAAAGATTTGTTGGAAACTTCTCCTTCATTTCGTGATCCAGAGAAAAAATCCTTTGGTTGCGAACATTACAAAAGAAATTGTAAACTCCGTGCTGCCTGCTGTGGAAAGCTATTCACCTGTAGGTTCTGCCATGACAAAGTTAGTGACCATTCAATGGATAGGAAGGCTACGACTGAGATGATGTGCATGCGCTGCCTTCAAATACAGCCTGTCGGACCAGTTTGTGTAACACCTTCCTGTGGTCGTCTCTTAATGGCAAAGTACTACTGTAGTATTTGCAAATTTTTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGTAATCTATGCCGTCTGGGAAAGGGACTTGGTGTTGACTTCTTTCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTGGTCGATCACCTATGCCGGGAAAAAGGTTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCCAGTGCATCTGTCAGAGCTCTCCCTTGTGGTCATTTCATGCATTCCGCTTGCTTTCAGGCATATACATGCAGTCACTACATCTGCCCTATTTGTAGCAAATCTTTGGGGGATATGGCGGTAAGAGATACACCATACGAAACTATACAATGCCAATTCGACCTAATAAATTGA 3570 0.412 MATTQASGGSGGGVAIMPGTVTSTDPSTSSTCSNTSLLLQSPILIFSLFHKAINSELQSLHQAALDFVSNHDDPSDLKSLSHRCHFLRTIYKHHCNAEDQVIFPALDKRVKNVASAYFLEHEGEGLLFNQLFELLNSNLLNEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSSEEQASLVWQFLCSIPVKMMAEFLPWLASYISSDEHQELLRCLCTIIPKEKLLHQVIFGWMEGLNIKCTNCTHDTKVQWQDAGTSNLPSHNNEKEYCDCGPSKTVKRKWVELSEDPNNSTLSCPLDELLLWHKAIKQELSDLAETARKMDLSEEFSDLSSFNGRLQFITEVCIFHSIAEDKVIFPAINSELYFFQNHTNEELQFDNLRCLIEGIQSAGANPSSPEFYIRLSSHTEQIMKTVLKHFENEEAQVLPLARKLFSHQRQRELLYESLCLMPLKLIESVLPWLVGSLSETEVRSFLQNMYMAAPASDHALVTLFSGWACNRHSRNSCFSSSVIGLCPARRLMETESTSLSFCMCEPSFSPNEKSSHVKQDDANSDIGPVKHGNPEPKQDNDASNLMVTRETLNSPNNQSCCVPGLGVNRNHLGGGSFSLTKSLRALSDCPSAPFLNSSLFMWETDVVSVDNQFTTRPIDNIFKFHKAIRKDLEYLDVESGKLNDCDDIFIQQFTGRLCLLWGLYRAHSNAEDDIVFPELESKENLHNVSHSYTLDHQQEDKLFLDISSGLTQLTRLHELLNKRISSDHLTNCYSNYSDCSDTIQNYNELSTKIQGMCKSIRVTLDQHLLREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTTALTQDEQNKMIDTWKQATKNTMFNEWLNEWWEGPASSLNITTPRDHSPGADAYEDSEHSFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKTYLIQNLMTSRWIASQQKSSQATGGESSKGKDLLETSPSFRDPEKKSFGCEHYKRNCKLRAACCGKLFTCRFCHDKVSDHSMDRKATTEMMCMRCLQIQPVGPVCVTPSCGRLLMAKYYCSICKFFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQCNCCLSMKLVDHLCREKGLETNCPICCDFLFTSSASVRALPCGHFMHSACFQAYTCSHYICPICSKSLGDMAVRDTPYETIQCQFDLIN. 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02122 1189 Gene3D nmb1532 protein domain like 41 193 - -
Seca10g02122 1189 Gene3D nmb1532 protein domain like 308 451 - -
Seca10g02122 1189 MobiDBLite consensus disorder prediction 959 988 - -
Seca10g02122 1189 SUPERFAMILY RING/U-box 1122 1168 - -
Seca10g02122 1189 ProSiteProfiles Zinc finger RING-type profile. 1123 1165 IPR001841 -
Seca10g02122 1189 Pfam Hemerythrin HHE cation binding domain 652 812 IPR012312 -
Seca10g02122 1189 Pfam Hemerythrin HHE cation binding domain 46 175 IPR012312 -
Seca10g02122 1189 FunFam Zinc finger protein-related isoform 1 1118 1167 - -
Seca10g02122 1189 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 695 1173 - -
Seca10g02122 1189 CDD Hr-like 656 812 - -
Seca10g02122 1189 SMART ring_2 1123 1164 IPR001841 -
Seca10g02122 1189 SMART ring_2 1036 1082 IPR001841 -
Seca10g02122 1189 CDD Hr-like 45 173 - -
Seca10g02122 1189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1118 1167 IPR013083 -
Seca10g02122 1189 FunFam Zinc finger protein BRUTUS 647 877 - -
Seca10g02122 1189 MobiDBLite consensus disorder prediction 545 577 - -
Seca10g02122 1189 SUPERFAMILY Zinc hairpin stack 1060 1115 IPR037275 -
Seca10g02122 1189 Pfam CHY zinc finger 994 1069 IPR008913 GO:0008270
Seca10g02122 1189 SUPERFAMILY CHY zinc finger-like 987 1050 IPR037274 GO:0008270
Seca10g02122 1189 CDD RING-H2_Pirh2-like 1122 1165 - -
Seca10g02122 1189 MobiDBLite consensus disorder prediction 1 28 - -
Seca10g02122 1189 Gene3D nmb1532 protein domain like 648 877 - -
Seca10g02122 1189 ProSiteProfiles Zinc finger CTCHY-type profile. 1059 1122 IPR017921 -
Seca10g02122 1189 ProSiteProfiles Zinc finger CHY-type profile. 987 1056 IPR008913 GO:0008270
Seca10g02122 1189 MobiDBLite consensus disorder prediction 959 978 - -
Seca10g02122 1189 CDD Hr-like 306 434 - -
Seca10g02122 1189 Pfam Ring finger domain 1122 1164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02122 Seca-Chr10 24298186 24308041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02122 41 1173 C2H2 Transcription Factor Family AT3G18290 61.116 0.0 1371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02122 K16276 - gmx:100783072 1932.92