Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca10g02121 | ATGGCTTTCGATGGATGTTGTCCTGACTGTAAACTTCCCGGCGATGACTGCCCACTGATTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATTCTTAAATGGGTGAATTCTCAGACATCACAAGCTCATTGTCCCATGTGCCGTCGGGAATGGCAGTTTAAAGGATGA | 174 | 0.4655 | MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG. | 58 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca10g02121 | 57 | Pfam | Anaphase-promoting complex subunit 11 RING-H2 finger | 1 | 56 | IPR024991 | GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602 | |
Seca10g02121 | 57 | FunFam | anaphase-promoting complex subunit 11 | 1 | 57 | - | - | |
Seca10g02121 | 57 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 57 | IPR013083 | - | |
Seca10g02121 | 57 | ProSiteProfiles | Zinc finger RING-type profile. | 7 | 50 | IPR001841 | - | |
Seca10g02121 | 57 | SUPERFAMILY | RING/U-box | 2 | 56 | - | - | |
Seca10g02121 | 57 | CDD | RING-H2_APC11 | 1 | 55 | IPR024991 | GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602 | |
Seca10g02121 | 57 | PANTHER | RING BOX | 1 | 56 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca10g02121 | Seca-Chr10 | 24292466 | 24294783 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca10g02121 | 7 | 50 | C3H Transcription Factor Family | AT1G72220 | 41.304 | 5.81e-07 | 42.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca10g02121 | K03358 | - | csv:105436141 | 141.354 |