Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02121 ATGGCTTTCGATGGATGTTGTCCTGACTGTAAACTTCCCGGCGATGACTGCCCACTGATTTGGGGTGCATGCAATCACGCATTTCATTTGCACTGTATTCTTAAATGGGTGAATTCTCAGACATCACAAGCTCATTGTCCCATGTGCCGTCGGGAATGGCAGTTTAAAGGATGA 174 0.4655 MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKG. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02121 57 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 1 56 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Seca10g02121 57 FunFam anaphase-promoting complex subunit 11 1 57 - -
Seca10g02121 57 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 57 IPR013083 -
Seca10g02121 57 ProSiteProfiles Zinc finger RING-type profile. 7 50 IPR001841 -
Seca10g02121 57 SUPERFAMILY RING/U-box 2 56 - -
Seca10g02121 57 CDD RING-H2_APC11 1 55 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Seca10g02121 57 PANTHER RING BOX 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02121 Seca-Chr10 24292466 24294783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02121 7 50 C3H Transcription Factor Family AT1G72220 41.304 5.81e-07 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02121 K03358 - csv:105436141 141.354