Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02120 ATGGAGGATCACACTAAGAGAATAAACCCTTCTTCCACCACGTGTTTAAAGCTCTTCGGTTTCAGCGTCCACGAAGACATCGACGACGAAGCAGCAGCAACTCTCGAAGACGCGTCAGATTCACTCGCCAAGTCCACCACTTCCCCCTCCGGCTCCACGGACTCCGGCGGTGGCGCCGCCGGCATAAACCCTTCCTCCGGCGACCGGAAATACGAGTGCCAGTACTGCTGCAGAGAGTTCGCAAACTCGCAAGCACTTGGCGGACACCAAAACGCGCACAAGAAAGAGCGTCAACAGCTCAAGCGTGCACAATTACAGGCTACACGAAACGCTGCCGTTTCGTTCGTTCGGAACCCGATTATCTCTGCCTTCGCTCCTCCGCCGCACCTGCTAGCGACGCCGGGTCCTGTGGTGGTTCCCGCAGCCCCGCCTTCGTGGGTTTACATGCAGCCACGTGCCGCGCCTCCTCCGTTCCACGTGTCGGTTTCACACGGCTGTGTGTTCCCGTCAGCGAACAACAGCAGCAACGGTAACGGTGGTGGCAACAACTATAGCATTATAACGGGTGCGAGATCCGCGAGCTCAGGAGTGTTACCTTACGTTGGCGGAGTAGGAGATTCCTCGCCCGCATTGTCAACGATGGGCTCGCAAGTACAGGCTCGGGCCCACTTTGGAAGGGTTGATGGGCCATCTTTGAGTAGGTTTACTAAAGGAGATGTGGGCCCTAATTTTGATGATGGATTCGGCTTGGATTTGCACCTTAGCCTAGCACCACCGTAA 780 0.5654 MEDHTKRINPSSTTCLKLFGFSVHEDIDDEAAATLEDASDSLAKSTTSPSGSTDSGGGAAGINPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQATRNAAVSFVRNPIISAFAPPPHLLATPGPVVVPAAPPSWVYMQPRAAPPPFHVSVSHGCVFPSANNSSNGNGGGNNYSIITGARSASSGVLPYVGGVGDSSPALSTMGSQVQARAHFGRVDGPSLSRFTKGDVGPNFDDGFGLDLHLSLAPP. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02120 259 Gene3D Classic Zinc Finger 60 118 - -
Seca10g02120 259 FunFam Zinc finger protein GIS3 59 121 - -
Seca10g02120 259 MobiDBLite consensus disorder prediction 39 60 - -
Seca10g02120 259 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Seca10g02120 259 MobiDBLite consensus disorder prediction 32 65 - -
Seca10g02120 259 PANTHER ZINC FINGER PROTEIN 5 9 258 IPR044299 GO:0010090
Seca10g02120 259 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Seca10g02120 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02120 Seca-Chr10 24284253 24285032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02120 11 258 C2H2 Transcription Factor Family AT1G68360 46.970 2.45e-56 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02120 - - tpra:123911684 366.311