LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g02095	ATGAAGGGTTGTGCGATTGAAAAGAGGGTAAGGGTTTTCACCTTGAGAAGAGAACCGCAAGCTGGAGAAGAGAAACGCACGCCGCCGGAGAAGGGAACCTTATGTCACCGGCCAGAGATGAGAATTGTACACCACTGGCACTTACGAAGCCTGAGAAGAGAATATACAAACACAATAGTAGGCTTTGTACACATTGATGATGTAATAGCTGCTCACTTGTTAGCTATGGAGGAGTCCAAAGCTTCTGGTAGCCTCGTTTGTTCAAGCACAGTAGCTCACTGGTCTCAAATCATTGAAATGCTTCGGGCCAAATATCCTTCTTATCCATATGAAAACAAAGTTCCCCTAGAGTTGAATGAGAAACTAATTAAACCAGTCCTAGAGCCAGAAATTAAGAAAGCAATAGATGACCTTGGTAGCCTAGAGGCCCCAGGCCCAGGTGGCCTTAATGGGCAATTTTTTAAATCCCACTGGGATACAATAAAAGAATCAGCTGCCCAATTCAGGCCTATCAGTTGCTGTAACTTTGTCCCCAAAATTCTGAGCAAAATCATAGTCAATAGACTAAAGCATAGCCTTCATAACCTCATCTCCCCTAACCAAAGTGCATTCATTAAGGGGAGGCTCATTCAAGACAATTTGATCATGGCTCATGAAACATTCCATTCCCTTAGATCAAGGAGGAAGAGAAATGCTACCCAATTTGCACTCAAGTTGGATATGAGTAAAGCCTATGATAGGCTAGAGTGGGAGTTCATACACAAAGTACTCAAAGCCTATGGATTTGATAAGAGATGGATTGCGTTGGTTATGAAAATAATCACATATGTATCCTACAGAATAAAAATCAATGGTTATACCAGAATATCACTTGGGAGGAAGTGCCCCCCACTGACTCACCTGTTTTTTGCGGATGACTCCCTGCTGTTTGCACAAGCTACACCTACAGAAGCCTATGAAATATTGCGAATTCTTAATCTATACTCCCAGGCTTCAGGACAGAGGATCAATTTATCCAAATCTGGGATCATTTGTGGAAGGAACATGGACCTAACAACTAGGAATCTCATGGAAGAAATATTCTCTATCAAAATTTGGGATCAGCTAGGGAAATACTTAGGTCTCCCATCCCAATGGGGTAGATCTAAAAGAGCCACCCTGCACTGGATAAAGGAGCTGGTTGAGGCTAAAATGCAGGGATGGAAGGAGTTACTACTAAATCAAGCAGGGAAGGAAATCCTCATTAAGGCTGTTATCCAAGCCATACCAGCCTATGCCACGGCAGGTCTTAAATTTCTAAAACAATTCTACCAAAGATTAAGCTCTAAGGTAGCTAGATTCTGGTGGAGGGGATCAGGGAAAGAAAGTGGTATACACTGGAAAGCTTGGAATACAGTAGCAACTAGTAAGAGGTCCGGTGGATTGGGGTTTAGAGATTTTACAGCTATGAACCTTGCTCACCTAGCTATGCAGGCCTAG	1479	0.428	MKGCAIEKRVRVFTLRREPQAGEEKRTPPEKGTLCHRPEMRIVHHWHLRSLRREYTNTIVGFVHIDDVIAAHLLAMEESKASGSLVCSSTVAHWSQIIEMLRAKYPSYPYENKVPLELNEKLIKPVLEPEIKKAIDDLGSLEAPGPGGLNGQFFKSHWDTIKESAAQFRPISCCNFVPKILSKIIVNRLKHSLHNLISPNQSAFIKGRLIQDNLIMAHETFHSLRSRRKRNATQFALKLDMSKAYDRLEWEFIHKVLKAYGFDKRWIALVMKIITYVSYRIKINGYTRISLGRKCPPLTHLFFADDSLLFAQATPTEAYEILRILNLYSQASGQRINLSKSGIICGRNMDLTTRNLMEEIFSIKIWDQLGKYLGLPSQWGRSKRATLHWIKELVEAKMQGWKELLLNQAGKEILIKAVIQAIPAYATAGLKFLKQFYQRLSSKVARFWWRGSGKESGIHWKAWNTVATSKRSGGLGFRDFTAMNLAHLAMQA.	493

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g02095	492	CDD	RT_nLTR_like	162	376	-	-
	Seca10g02095	492	Gene3D	-	34	141	-	-
	Seca10g02095	492	PANTHER	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	116	485	-	-
	Seca10g02095	492	Pfam	Reverse transcriptase (RNA-dependent DNA polymerase)	162	286	IPR000477	-
	Seca10g02095	492	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	56	139	IPR036291	-
	Seca10g02095	492	SUPERFAMILY	DNA/RNA polymerases	164	346	IPR043502	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g02095	Seca-Chr10	24006813	24010119	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g02095	47	121	Monolignol Biosynthesis Gene Families	AT1G15950	29.333	9.69e-06	45.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g02095	-		-	ahf:112803243	400.979