Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02094 ATGAAGGAGGGAAAGGAGGAGTGTGGGAAGGTGTACGAGTGTAGATTTTGCTCTCTCAAGTTCTGCAAATCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAGAGGGAAACTGAGACGCTGAACCATGCTCGTCAGCTGGTCTACCGTAACGATCATAACTTAACCAACCAGCAAGGTGCCCCCCACCTAGGATGCTGTCAACCAATAGCATCATCAGGAGGGAGCTATCATAACAATATGGGAGACCCAACAATGCGTGTGAGATTCCCAAGATCCTCAACCCACATGTCACCACCACCACCTCCACCACAACAACAACAACCATTCTTATATCCCTCACCTTCAAGGCCTTTCTCATCATTTCCCTCACACTATAACAATCCTGTGAACGAATACTATGTGGGACATGTCCTGAATGGGCATCACAACTTGAACTATGTGGGAGGAGAATCAAATTACAGTTGCATTGGGGCACCCGTAGGACAAGTATTGGGTAAGGACAGGACAGTACTGCAGAATCAGGTGGAGGAAGGGATGAATTGGGGAAGGAGCTATAATTCAGGATCAACACATCACCTATTGGATCCTTCTTCATCGATCAATCGGTTTCAAGATGGCTTCTAA 633 0.4755 MKEGKEECGKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVYRNDHNLTNQQGAPHLGCCQPIASSGGSYHNNMGDPTMRVRFPRSSTHMSPPPPPPQQQQPFLYPSPSRPFSSFPSHYNNPVNEYYVGHVLNGHHNLNYVGGESNYSCIGAPVGQVLGKDRTVLQNQVEEGMNWGRSYNSGSTHHLLDPSSSINRFQDGF. 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02094 210 MobiDBLite consensus disorder prediction 97 113 - -
Seca10g02094 210 PANTHER ZINC FINGER PROTEIN JAGGED 6 183 IPR045320 GO:0003700
Seca10g02094 210 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Seca10g02094 210 SUPERFAMILY beta-beta-alpha zinc fingers 10 40 IPR036236 -
Seca10g02094 210 MobiDBLite consensus disorder prediction 84 116 - -
Seca10g02094 210 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 39 IPR013087 -
Seca10g02094 210 Gene3D Classic Zinc Finger 1 64 - -
Seca10g02094 210 FunFam Zinc finger protein STAMENLESS 1 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02094 Seca-Chr10 23996695 23998209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02094 2 164 C2H2 Transcription Factor Family AT1G13400 44.706 1.00e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g02094 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02094 - - aprc:113871902 238.424