Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02088 ATGACTTCTTCCATGAACGTGGCGAATGGCAGCAAAACAACAAGAACCTGTGATATCTGCATAACAAAACCAGCATTCTATTACTGTGCTTCTGATGATGCTTTCCTCTGCCACACTTGTGACAATTCTGTTCACTCTGCTAATCCATTGGCTCGCAGGCACCAAAGAGTTCTCTTGAAAACAATTGCCCCTTGTAACAAGTACTCCTCTAAAGCATCTACACATAGGAACCTCAATTGTGTTCCATCTTGGCACAGAGGGTTCACCAAGAAACCCCGAACACCAAGACATGGTAAGCATTACTCAACCATCACAACTAAGGCTAGGAAGCAATTATGTCTTGTACCTGAGGTGGGTGATACAAATTCCCATGAAGAGAATGGGGAGGAACAAGTTCTTTATAGGGTGCCTAATTTGGTTGGTGCTCTTGAGGTTGAAAGCCAGAGGAAAGTTTTGTTAGGTTGTGACTATGATGGAGTTGAGTGTGAAAGTTTAAATGGATTTGTTTCATCGGATATTGAGCTTGCTGCTGATATTGAGAGTTTGTTGGGGAAGGGACTAAAGGAGGATCAGTGCATGGGAATGGAAGAGTTGGGGCTGGTTGATTGCAAAGAGGAGGGTTCTTCAGGGGAGTGTTGTGTGGGAAGTGGAAAGGTGAAGGTGGAAGAGGAAAATCAGGTGGAGATGGGGAGAGAATTAGCATTTGAATTGAGATCATTTGATAATGATGACTCAACATGTGAAAAGGTTGGTTTGGATGTGACCAAAGATGTGAAGAATTGTGGAGGGAACAATAACCATAACCAAGCAAAGAGGAAGATATTGTTGCAGTTAGATTATGAAGCAGTAATCACTGCTTGGGAAAGCAAAAGGTCACCATGGACTACTGCTGATAAACCAGACTTCCTCACTGATCACTACATGGTGGGAAGTTATGGAATGGGGCTTCACCAGGCTTATGGAGAATTGTTTGGGTGTGATGGAGACCCAACAATAGCAGATGGGGAAAGAGAAGCGAGGGTATCAAGATATAGAGAAAAGCGGCAAACAAGGTTGTTCTCGAAGAAAATAAGGTATGAGGTTCGAAAATTGAACGCAGAGAAGAGACCCCGAATTAAAGGCAGGTTTGTAAAGATTGCAAGCTAA 1146 0.4311 MTSSMNVANGSKTTRTCDICITKPAFYYCASDDAFLCHTCDNSVHSANPLARRHQRVLLKTIAPCNKYSSKASTHRNLNCVPSWHRGFTKKPRTPRHGKHYSTITTKARKQLCLVPEVGDTNSHEENGEEQVLYRVPNLVGALEVESQRKVLLGCDYDGVECESLNGFVSSDIELAADIESLLGKGLKEDQCMGMEELGLVDCKEEGSSGECCVGSGKVKVEEENQVEMGRELAFELRSFDNDDSTCEKVGLDVTKDVKNCGGNNNHNQAKRKILLQLDYEAVITAWESKRSPWTTADKPDFLTDHYMVGSYGMGLHQAYGELFGCDGDPTIADGEREARVSRYREKRQTRLFSKKIRYEVRKLNAEKRPRIKGRFVKIAS. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02088 381 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 8 378 - -
Seca10g02088 381 Pfam CCT motif 337 378 IPR010402 GO:0005515
Seca10g02088 381 CDD Bbox1_BBX-like 17 59 - -
Seca10g02088 381 ProSiteProfiles CCT domain profile. 337 379 IPR010402 GO:0005515
Seca10g02088 381 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Seca10g02088 381 SMART bboxneu5 12 59 IPR000315 GO:0008270
Seca10g02088 381 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02088 Seca-Chr10 23911712 23913878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02088 1 378 C2C2-CO-like Transcription Factor Family AT1G25440 39.225 9.01e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca10g02088 CCT 7.5e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02088 - - qsu:112018537 345.125