Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02084 ATGGTTGAGCCTCCTATTCAATCAGCTAATCACTCAAAAAAGTTAAAACAAAAGCACAATCCATTCCATGACTCCAAAATCACAAGAAAACTGCGCATCATCTATGATGATCCTGATCCCTATGCAACTGAGTCTTCATCAGATGAAGATGAGCATTTTGAGAAGCCTAAGAAGGTGAGGAGAACCGTGCATGAGGTCACTCTCCCCCTTGTTTCAGTTAACTCTTTCTCTCTTGGTGAAGCCAGCACCGAGACCTCAAGCAACAATGGATTGAACAAGAAGAGGGTTTTAGCCAAAACCCCCTCAATGAAGAGGCAACCTGGTAGCAAATACAAAGGTGTTCGAATGAGGAAATGGGGCAAATGGGCTGCAGAGATCCGTGACCCGTTCAAGGGTACACGCCAATGGTTAGGCACCTACAACACTGCTGAAGAGGCTTCACAAGCCTATGAGAACAAAAGGCTTGAATTTGAAGCTAGGGCCAAGGCTCTATCTGATGAGAAGAGTATCAACAACAACAACAATGTTGTTGTCTCTGTTGAAACTATGGCTACCCCAGAAAAGAATAGCCAAAATAGCTGTGTTTCTTCTGCTGCAGCTTCTGTATCAGACTCCAAGTCTGCTGCTTTGGAGGACTCAGAGAGTGCCTTGTCACATACATCACCTCCTTCTGTGCTGGAATTGGATACCTCAGCTTCCAATTTGATTGAGAGTGGTAAGGTTTCAACCAACGAAGCTGCTGAAACCACTGCTTTGGAGGCTGCTGAGACCATTGGTTTGGAGGCTGAATTTGCCAAGCTGGAAATGTCAGATTTTAGCCTTTTGAACATTCTATCACCATCTGCTGTTGCTGCAGCCACTCCATCTCGGTTTGAATTGAATTGGTTGGCGATTGATGGTTTTGAACAGGGCTATGACTATGATGATTTTGGTGGCCTGGAGGACATTCAAATTTGTGGCTTTCATGATGAAGGGCCTAGTGAACTTCCTGATTTTGATTTTGATGACTTTGGTGTTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCATGCGTATAA 1068 0.4429 MVEPPIQSANHSKKLKQKHNPFHDSKITRKLRIIYDDPDPYATESSSDEDEHFEKPKKVRRTVHEVTLPLVSVNSFSLGEASTETSSNNGLNKKRVLAKTPSMKRQPGSKYKGVRMRKWGKWAAEIRDPFKGTRQWLGTYNTAEEASQAYENKRLEFEARAKALSDEKSINNNNNVVVSVETMATPEKNSQNSCVSSAAASVSDSKSAALEDSESALSHTSPPSVLELDTSASNLIESGKVSTNEAAETTALEAAETIGLEAEFAKLEMSDFSLLNILSPSAVAAATPSRFELNWLAIDGFEQGYDYDDFGGLEDIQICGFHDEGPSELPDFDFDDFGVDEFAGWIEEPLNIPCV. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02084 355 SMART rav1_2 110 164 IPR001471 GO:0003700|GO:0006355
Seca10g02084 355 Pfam AP2 domain 109 159 IPR001471 GO:0003700|GO:0006355
Seca10g02084 355 CDD AP2 109 150 IPR001471 GO:0003700|GO:0006355
Seca10g02084 355 SUPERFAMILY DNA-binding domain 109 157 IPR016177 GO:0003677
Seca10g02084 355 MobiDBLite consensus disorder prediction 21 37 - -
Seca10g02084 355 MobiDBLite consensus disorder prediction 45 59 - -
Seca10g02084 355 Coils Coil 140 167 - -
Seca10g02084 355 MobiDBLite consensus disorder prediction 1 59 - -
Seca10g02084 355 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Seca10g02084 355 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Seca10g02084 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 240 - -
Seca10g02084 355 Gene3D AP2/ERF domain 109 165 IPR036955 GO:0003700|GO:0006355
Seca10g02084 355 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02084 Seca-Chr10 23851806 23853177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02084 10 354 AP2-EREBP Transcription Factor Family AT1G68550 34.463 1.58e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g02084 AP2 7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02084 - - gmx:102667919 419.468