Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02039 ATGCAATTCGCAGAGAAAATAATGCACCCTCAGAAGATGGGGTTCCGCGACTACATCGAAGCATTGGAAGAAGAAAGGAAAAAAATCCAGGTTTTCCCCAGAGAGCTTCCGCTTTCATTAGAGCTTGTCACGCAAGATGTGGGTTTTGATGGGTTTCCTTTTTTTGATGCAGCCATTGAAGCGTGTAAGCAGCAGTTGTCAGGAACAATGATGGACTACAATTTGAATGGCCAATCGGAGTGTTCAGACCAGACATCAATGGAAGAAGGCCCTGTTTTTGAAGAGTTTATTCCTATTAAGAAAAGAGCATCCCCTGATTGTGATGAAGAAGATGATGATGATGATGATGATGAAGAACATTCTCATAAGCACAAGAACAAGAACACCCTTGATAAAAAGAAATCAGATTGGCTCAGATCTGTTCAGTTGTGGAATCCTGATCCCCCTCTTCCTAAAGAGGATTTGCCTAGAAAAACAAATGTTGTGGAAGTGACAAGAAATAGTGGTGCGTTCCAGCCATTCCACAGAGAAGAAAGTGCTGTTGTTGGAAAGACTAATGCATCTGCATCTGGTAAATCACCCTCTTCACCACCAGTACCTGCTACAAGTTCTACAGGACCAGCCAGAGTAGACAATGGTGGAAGCAGCAAAAGAGAGGAAAAAGGACAGAGTCAGAGAAAGCAGCGCCGGTGCTGGTCACAAGAATTGCACAAGCGCTTCTTGCAAGCCCTTCATCAGCTTGGTGGTGCAGATACTGCCACACCAAAACAGATCAGGGAACTAATGAAAGTTGATGGACTCACCAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGTTTGCACACAAGAAGAAGCCCTGTGATTCACAACAATGCTAATTCACAAACAGCTCCTTTGTTTCTTGTGGGAAACATTTATGTTCAACCACCAGAGTATGCTGTGGCCACCACAACAGCATCAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATCTATGCACCTGTGGCTGCACATCCTACAGCTGTCCAGCACACATCAGCGCCTGCAGTTATGAAGGCACAATTAAAGCAATTAGAGATGTCTGAGCATTCACATTCAGAAGAAAGGGCTAATCATAGTGAAGGGGCTGTTCATTCAAACTCCCCTGCCTCATCATCCTCCACTCATACCACCACAAATTCACCTAGGTGTTGA 1200 0.4408 MQFAEKIMHPQKMGFRDYIEALEEERKKIQVFPRELPLSLELVTQDVGFDGFPFFDAAIEACKQQLSGTMMDYNLNGQSECSDQTSMEEGPVFEEFIPIKKRASPDCDEEDDDDDDDEEHSHKHKNKNTLDKKKSDWLRSVQLWNPDPPLPKEDLPRKTNVVEVTRNSGAFQPFHREESAVVGKTNASASGKSPSSPPVPATSSTGPARVDNGGSSKREEKGQSQRKQRRCWSQELHKRFLQALHQLGGADTATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPVIHNNANSQTAPLFLVGNIYVQPPEYAVATTTASGELTTVTAPTGIYAPVAAHPTAVQHTSAPAVMKAQLKQLEMSEHSHSEERANHSEGAVHSNSPASSSSTHTTTNSPRC. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02039 399 MobiDBLite consensus disorder prediction 213 231 - -
Seca10g02039 399 FunFam Myb family transcription factor 226 284 - -
Seca10g02039 399 MobiDBLite consensus disorder prediction 361 376 - -
Seca10g02039 399 SUPERFAMILY Homeodomain-like 225 285 IPR009057 -
Seca10g02039 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 227 282 IPR006447 GO:0003677
Seca10g02039 399 MobiDBLite consensus disorder prediction 377 399 - -
Seca10g02039 399 MobiDBLite consensus disorder prediction 98 129 - -
Seca10g02039 399 Pfam Myb-like DNA-binding domain 229 278 IPR001005 -
Seca10g02039 399 MobiDBLite consensus disorder prediction 167 231 - -
Seca10g02039 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 368 IPR044787 GO:0003700|GO:0006355
Seca10g02039 399 MobiDBLite consensus disorder prediction 183 211 - -
Seca10g02039 399 Gene3D - 226 284 - -
Seca10g02039 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 224 284 IPR017930 -
Seca10g02039 399 MobiDBLite consensus disorder prediction 361 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02039 Seca-Chr10 23378531 23380623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02039 1 339 G2-like Transcription Factor Family AT1G68670 47.645 1.96e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca10g02039 Myb_DNA-binding 3.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02039 - - gmx:100819750 478.018