Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02034 ATGGATGGAGGTAGTTGCATAGACGAAAGCACCACCACTGAATCGCTCTCGATTACCTTATCGCCGGCGAAGAAGCCGTCGTCTCCCCCACCGCCGAACAGCCTCTGCCGCGTCGGCAGCGGCGCGAGCGCGATCCTGGACCCCGACCTCGCCGGCACCGGAGAAGCTGAATCGCGGAAGCTTCCGTCCTCAAAGTACAAAGGCGTGGTGCCGCAGCCGAACGGTCGTTGGGGAGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTACGACATCGCGGCACAACGTTTCCGCGGCAAGGACGCCGTAACTAACTTCAAGCCTCTCGCCACCGCCGGCGACGACGGCTCCGACGATGACGTGGAATCGGAGTTCCTCAACTCGCATTCAAAATCCGAGATCGTCGACATGCTTCGGAAGCACACGTACAATGACGAGCTTGAGCAGAGCAAGCGCAGCCGCGGCTTCGTCGGCCGGCGGCAAAGAAACGGTGGAATGGATAACTGTAACACCGGCGCGTGCGAGAAGAAGGCGCGTGAGCCTCTGTTCGAGAAGGCCGTTACGCCTAGTGACGTTGGGAAGTTGAATCGGTTAGTTATACCGAAACAACACGCGGAGAAGCACTTTCCGTTACAGAGTGTCGGCGCGGGAAGCGTTGCTGCGAAGGGTGTTTTGCTGAACTTCGAGGACGTTGGAGGGAAAGTGTGGCGGTTTCGTTACTCTTATTGGAACAGTAGCCAGAGCTACGTGCTTACGAAAGGTTGGAGCCGGTTCGTTAAGGAGAAGAACCTGAAAGCCGGTGACACGGTTTGTTTTCACCGCTCGACCGGACCGGACAAGCAACTCTTTATTGATTGGAAAGCCAGGAGGAATGTTAATGAGGTTGGATTGTTCAGCCCGGTTGGACCGGTCGTTGAGCCGATTCAGATGGTTCGGCTCTTTGGGGTTAATATTTTGAAACTCCCTGGGTCCGATTCTAATAATGCTAATAATAATAATAATAATGCCGCTACTGCTCCTATTGCTGGGTGCTGCAATGGCAAGAGGAAAGAAATGGATCTGTTTACGTTAGAGTGTAACAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1149 0.5466 MDGGSCIDESTTTESLSITLSPAKKPSSPPPPNSLCRVGSGASAILDPDLAGTGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLATAGDDGSDDDVESEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFVGRRQRNGGMDNCNTGACEKKAREPLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVGAGSVAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLFIDWKARRNVNEVGLFSPVGPVVEPIQMVRLFGVNILKLPGSDSNNANNNNNNAATAPIAGCCNGKRKEMDLFTLECNKKPKIIGAL. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02034 382 Gene3D - 184 309 IPR015300 -
Seca10g02034 382 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 60 345 IPR044800 GO:0003700
Seca10g02034 382 CDD B3_DNA 194 288 IPR003340 GO:0003677
Seca10g02034 382 SMART B3_2 196 303 IPR003340 GO:0003677
Seca10g02034 382 ProSiteProfiles AP2/ERF domain profile. 65 120 IPR001471 GO:0003700|GO:0006355
Seca10g02034 382 CDD AP2 64 119 IPR001471 GO:0003700|GO:0006355
Seca10g02034 382 SUPERFAMILY DNA-binding domain 64 120 IPR016177 GO:0003677
Seca10g02034 382 Pfam B3 DNA binding domain 196 299 IPR003340 GO:0003677
Seca10g02034 382 SMART rav1_2 65 126 IPR001471 GO:0003700|GO:0006355
Seca10g02034 382 MobiDBLite consensus disorder prediction 1 70 - -
Seca10g02034 382 FunFam AP2 domain-containing protein RAP2.8 64 121 - -
Seca10g02034 382 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Seca10g02034 382 SUPERFAMILY DNA-binding pseudobarrel domain 193 300 IPR015300 -
Seca10g02034 382 ProSiteProfiles B3 DNA-binding domain profile. 196 302 IPR003340 GO:0003677
Seca10g02034 382 MobiDBLite consensus disorder prediction 1 23 - -
Seca10g02034 382 Gene3D AP2/ERF domain 64 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02034 Seca-Chr10 23299866 23301014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02034 5 382 B3 DNA Binding Superfamily AT1G25560 59.439 2.05e-142 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Seca10g02034 B3 5.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02034 K09287 - gmx:100801107 576.244