Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g02027 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAAAGTGCATCAGGAGGGTGTGATCCTGATAAAGTTATATGGAAAAGCAATCCTTCCAAGGCTTGCCCAAATTGTCAACATTCTATTGACAACAATGATGTAGCACAAGATTGGCCTGGCTTACCAAAAGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAGATTCAAAACCTCATCCTTTCATTGATGAATTTATTACTACTCTTAAAGAGGGTGATGGAATTTGTTATACTCACCCTCAAAATTTACCTGGTGTTAAGCAAGATGGAAATGCTTCCCATTTCTTCCACAGAGCAATTAAGGCTTACAATACTGGAACTCGAAAGCGTCGAAAAATAAATGATCAGGATTTTGGTGATGTCCGCTGGCATAAGACTGGAAAGACTAAACCAGTAATCTTGAATGGGGTTCAAAGAGGCTGTAAAAAGATTATGGTTCTGTATATGAGCAATCCAAGAGGAGGAAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCACCTTGGAACAGAAGAGGATGAAAAGGATGGGGAGTATGTCATCTCTAAAGTGTCTTACCAGCAGGCGCAAGTCAGATCGGGTGATAAAGATGACCAGGATGTTCCTGAAGCCACTGAAGCCACAATTGTGAAAGTGGATCCAGTCACTCCCAAATCTGTGACTCCTGAGCCTCCTTGTAATGAAATGCAGTATTCAGATCTTGACCTAGGACAAGAAACACATAACATTCCTCAGCCTCTTCAGATGGATTGCATAAATGAAGTTGAAGCTGATTGTGAGGCACCTGCACAAAATGATCCATCTATGGTAGAAACTCAACATAATGAAGGGATAGATGATAAAGAAAACAATGCTGATGAAGGCCAAAAATGGTGGGATAGTGAGTCACAGAATCTGTTGGATTCACAACAACTGGTTGAAGCATTGTCCTTGTGTGATGATCTACTTCAAAGCCAGTCTCCCAATAGAGATGGGAAAGATGGAGAACATAAGAACCAACTTGGTCTTTCTGTTTATGCTCAACTAGGACCAGAGCATCTAAAGAAGGATATTGAAGAGTGCCAAAATCTTGTCCTTGACCCTGCAAATCTAGAGAATGATACGCCTTCAGAGTTTCGACTAAGTCAGCTGGAATTTGGTTCACAGGATAGCTTTATTTCCTGGGGTTATAGCAAGGCAGTAAACTAA 1275 0.4063 MAGPSWLVDKSRIATKIKSASGGCDPDKVIWKSNPSKACPNCQHSIDNNDVAQDWPGLPKGVKFDPSDQEIIWHLLAKVGVGDSKPHPFIDEFITTLKEGDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKINDQDFGDVRWHKTGKTKPVILNGVQRGCKKIMVLYMSNPRGGKAEKTNWVMHQYHLGTEEDEKDGEYVISKVSYQQAQVRSGDKDDQDVPEATEATIVKVDPVTPKSVTPEPPCNEMQYSDLDLGQETHNIPQPLQMDCINEVEADCEAPAQNDPSMVETQHNEGIDDKENNADEGQKWWDSESQNLLDSQQLVEALSLCDDLLQSQSPNRDGKDGEHKNQLGLSVYAQLGPEHLKKDIEECQNLVLDPANLENDTPSEFRLSQLEFGSQDSFISWGYSKAVN. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g02027 424 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
Seca10g02027 424 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Seca10g02027 424 MobiDBLite consensus disorder prediction 294 315 - -
Seca10g02027 424 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Seca10g02027 424 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Seca10g02027 424 FunFam NAC domain-containing protein 8 67 220 - -
Seca10g02027 424 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 384 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g02027 Seca-Chr10 23171490 23177899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g02027 14 216 NAC Transcription Factor Family AT1G28470 54.717 1.51e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g02027 NAM 3.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g02027 - - gmx:100803236 751.51