Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01994 ATGGCAATGCTCGGTCCATCAGGTAGCGGCAAGACCACCTTACTCACCGCCCTCGCCGGCCGCCTCGCCGGAAAACTCTCCGGCGACGTCACCTACAACGGCCAACCTTTCTCCGGCGCTATTAGACGCAGCACAGGGTTCGTGTCTCAAGATGACTTGTTGTATCCTCACCTTACCGTGATAGAGACCCTCTCCTATGCTGCTCTGTTGAGACTTCCCCAGAGCCTTACAAGGGAAGAGAAAATGGAGCATGTGGAAATGATCATATCGGAGTTAGGGCTTTCCCGGTGCCGGAACAGCCCCGTTGGCGGCGGGACAGCCTTGTTCCGGGGAATTTCCGGCGGGGAGAGGAAGCGGGTCAGTATCGGGCAGGAGATGTTGATCAACCCGAGTTTGTTGTTGCTGGATGAGCCAACTTCTGGGCTCGACGCCACCACGGCCCAGCGCATCGTGGCGGTGCTTCGAAGCCTCGCCAGCGGTGGCCGGACCGTGGTGACCACTATTCACCAGCCTTCCAGCCGGTTATACAGGATGTTTGATAAGGTGGTGGCGCTTTCGGACGGGTACCCAATTTATAGCGGGCAAGCGGGTCGGGTCATGGATTATCTCGAATCCGTGGGATTTGTGCCCGCTTTCAATTTCGTCAACCCGGCTGATTTTCTGCTTGACCTTGCTAATGGATTACATGGGTTTGCAGGCATAGTTGCTGATGTCAAACCAAATGATAAGATAGATCACCATGAGGATCAAGCTTCAATCAAACAATCCCTAGTTTCATCCTATAAGAAGAATTTATACCCTCTTCTCAAAGAAGAGATTCAACAGAATACTAGAGGCCCAACATCTTTTACTACAGGAACACACAGAAGTTCTGAGAACCAATGGACCACTACCTGGTGGGAGCAATTCAAGGTTCTGCTTAAGAGGAGTTTAAAGGAGAGGAGGCATGAATCTTATTCTGGCTTAAGGATTTTCCAAGTCTTGTCAGTCTCAATTCTCTCAGGACTTCTGTGGTGGCATTCTGATCCCTCACATATACAAGATCAGGTAGGCCTGCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATTCCATCTTTGCATTTCCTCTGGACCGGCCAATGCTGATGAAGGAACGATCATCAGGCATGTATCATCTCTCCTCCTACTATGTTGCTCGCATGGTTGGGGACTTACCAATGGAGCTTGTGCTTCCTACTATCTTTGTAACTATTGCCTACTGGATGGGTGGTCTCAAGCCTTCACTGGTCACATTTGTGTTAACCCTCTTGATCATGCTTTTTAATGTGCTAGTCTCTCAAGGAATAGGCCTGGCACTTGGGGCCATTCTAATGGATGTTAAACAGGCCACAACTCTAGCTTCAGTGACTATGCTGGTGTTTCTTTTAGCTGGTGGTTACTATGTTCAGCAAATGCCATCTTTTATAGCTTGGTTGAAGTACATTTCTTTCAGTCATTACTGCTATAAGCTCTTGGTAGGAGTGCAGTATTCAGTAAATGAGGTTTATGAGTGTGGACCAGGGTTACATTGCAGGGCAAGAGATTTTCCTGCCATAAAGTTTCTTGGGCTTGACAGCATGTGGGCTGATGTGGCTGTATTGGCTATAATGTTGATCGGATACAGAGTTGTGGCTTACCTAGCTTTGAGGATGGGGCTGCATCACTGA 1698 0.4888 MAMLGPSGSGKTTLLTALAGRLAGKLSGDVTYNGQPFSGAIRRSTGFVSQDDLLYPHLTVIETLSYAALLRLPQSLTREEKMEHVEMIISELGLSRCRNSPVGGGTALFRGISGGERKRVSIGQEMLINPSLLLLDEPTSGLDATTAQRIVAVLRSLASGGRTVVTTIHQPSSRLYRMFDKVVALSDGYPIYSGQAGRVMDYLESVGFVPAFNFVNPADFLLDLANGLHGFAGIVADVKPNDKIDHHEDQASIKQSLVSSYKKNLYPLLKEEIQQNTRGPTSFTTGTHRSSENQWTTTWWEQFKVLLKRSLKERRHESYSGLRIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNSIFAFPLDRPMLMKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTIAYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYVQQMPSFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGPGLHCRARDFPAIKFLGLDSMWADVAVLAIMLIGYRVVAYLALRMGLHH. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01994 565 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 556 - -
Seca10g01994 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 205 IPR027417 -
Seca10g01994 565 SMART AAA_5 1 190 IPR003593 GO:0016887
Seca10g01994 565 Pfam ABC-2 type transporter 169 228 IPR043926 GO:0140359
Seca10g01994 565 ProSitePatterns ABC transporters family signature. 112 126 IPR017871 GO:0005524|GO:0016887
Seca10g01994 565 Gene3D - 1 206 IPR027417 -
Seca10g01994 565 Pfam ABC-2 type transporter 301 507 IPR013525 GO:0016020|GO:0140359
Seca10g01994 565 Pfam ABC transporter 2 140 IPR003439 GO:0005524
Seca10g01994 565 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 212 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01994 Seca-Chr10 22623318 22626843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01994 1 188 Calmodulin-binding Proteins AT2G36910 27.692 9.10e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01994 K05681 - gmx:100810165 933.71