Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01982 ATGGCGGAATTGGGTAGGAGAAGAATGAGGGGTGAAAAGAGGAAAAAGCTGCATCTTAGTAAGATCTACTCATTTGCATGTGGGAGATCATCTTTCAAGGGAGATCATTCACAGATTGGGGGACGTGGCTATTCCAGGGTGGTGTTTTGCAATGAACCAGATAACTTTGAGGCAGGGATTAGGAATTATGCAGATAATTCTGTCAGGTCCACAAAGTATACTCCTGCTACTTTCTTGCCAAAGTCACTGTTTGAGCAGTTTAGGAGAGTGGCTAATTTTTATTTTTTGGTTACTGGTATATTGGCCTTCACAAAGCTTGCTCCTTATACAGCTGTCACTGCTATCCTTCCTCTGACTATCGTTATTGGGGCAACTATGGTCAAAGAGGGTATTGAAGATTGGCGTCGCAAAAAGCAGGATATGGAGGTGAACAATAGAAGAGTTAAAGTGCACAAAGGACATGGAACTTTTGAGTATACTGAGTGGAAGAATCTGAGGGTGGGGCATATAGTAAAGGTAATGAAGGATGAATTTTTCCCTGCTGACCTCCTACTTCTTTCATCCAGCTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGGGAGACAAATTTGAAGTTAAAACAAGGGTTGGAAGTAACTTCTTCCTTACATGAGGATTTTGAGTTCAGTGATTTTAAAGCTACAATCAAATGTGAAGATCCAAATGCAAATTTATATTCATTTGTGGGGAGCATGGAGTTTGAAGAGCAACAACATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCTAAACTTCGAAATACGGACTACATATTTGGAGCTGTTGTCTTCACTGGTCATGACACAAAGGTTATTCAAAATTCTACTGATCCCCCTTCAAAGAGAAGCAAAATTGAGAGGAAGATGGATAAAATTATCTACTTCTTGTTTTGTATTTTATTTCTAATGGCATTTGTTGGATCTATTTTCTTTGGCATTGCAACTAAAGATGATTTGGATGATGGGGTGATGAAAAGATGGTATTTGAGACCAGATGATTCTACAATTTTCTTTGATCCTAAAAGAGCACCTGCTGCTGCTATATTTCATAGTTTGACAGCCTTAATGTTATATGGCTTCTTCATTCCCATCTCATTGTATGTATCAATAGAAATTGTCAAAGTTCTTCAAAGCATCTTCATCAATCAAGATATCCATATGTACTATGAAGAAGCAGACAAACCAGCCCATGCCCGTACTTCAAACTTGAATGAGGAACTTGGCCAAGTTGACACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAATTCAATGGAGTTCATCAAATGTTCCATTGCTGGGGTAGCATATGGCCGTGGTGTTACAGAGGTTGAGAGGGCTATGGATAGGAAAAATGGTTCTCCTTTGATCAATGATATCATCAGCGAATCTCCTGATAGAAATGCACCCATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGTCTCATGTAGATGTTATCCAGAATTTTTTTCGCTTATTGGCAATCTGTCATACAGCTATTCCAGAAGTGGATGAAGGCACAGGCAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCAGCAAGAGAAATTGGTTTTGAATTCTATAAAAGGACTCAGACTAGTTTATCGATGTATGAATTGGATCCAGTTTCTGGTAACAAAGTTGAAAGGATGTACAAACTTCTCAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCGGTAATAGTGAAAGATGAAGAAGGGAGAATTTTGCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGGATGGGAGGGAGTTTGAAGAGAAAACCTCGGAACATGTACATGAATATGCTGATGCAGGTCTAAGAACCCTGATACTTGCGTATCGTGAACTTGATGAAGAACAATACAAGGAGTTTGATAAGAAATTATTTCAAGCAAAAAATTCAGTTAGTGCAGATCAGGAAACACTGATTGAGGAAGTATCAGATAAGATTGAGAGAAATCTAATCCTTCTCGGTGCCACTGCTGTAGAGGACAAACTCCAAAATGGGGTTCCTGATTGCATTGACAAGCTTGCACAAGCTGGAATTAAGATTTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATAGGCTTTGCTTGTAGCTTGCTTAGACAAGGAATGAAGCAGCTTATAATTCATTTGGAGACTCCAGAAATTCAAGCATTGGAGAAGGGTGGAGACAAGTCGGCTATTGCCAAGGCTTCAAGGGAAAGTATCCGCCGTCAGATATCTGAAGCTGCTCAACAGGTTACTACCTCCAGAGGAACCTCTCAGAAAGCATTTGCTCTAATTATTGATGGAAAATCACTTACTTATGCTCTAGAGGATAATACTAAGGGCATGTTTCTAGAGCTTGCAATTCGTTGTGCATCAGTTATCTGTTGCCGCTCGTCACCTAAGCAGAAAGCACTGGTCACTAGGCTGGTCAAATCTGGAACTGGTAAAACTACATTAGCTATTGGAGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATATAGGGGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCTGTTATGTCTAGTGATATTGCAATTGCACAGTTCCGTTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATCTCATCAATGATATGCTATTTTTTCTACAAGAATATCACTTTTGGCTTTACTCTGTTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTGTCTCTGTATAATGTCTTCTTTTCATCACTTCCCGTGATTGCCCTTGGGGTCTTTGACCAGGATGTATCTGCTCGGTACTGTCAGAAATTTCCTATGTTATATCAAGAAGGTGTACAAAATATCCTCTTTAGCTGGCGTCGAATACTTGGCTGGATGCTTAATGGATTTATCAGTGCCATAATAATATTCTTCTTCTGCACAAAGGCAATGGAGATTCAGGCCTTTGATGAGGAAGGAAGAACAGCTGGAAGGGATATACTGGGAGCAACAATGTATACATGTGTGGTTTGGGTTGTAAACTTGCAGATGGCACTTGCTATAAGTTACTTCACCTTGATTCAACATATTTTCATCTGGGGGACCATTGCTTTATGGTATCTTTTCCTCATAGTGTATGGAGCAATACCTTCAAGCTTTTCTACAAATGCTTACAAAGTCTTCATTGAAACTCTTGCTCCATCTCCTTCCTTTTGGATTGTGACATTGTTTGTGGTGATCTCAACACTCATACCATACTTCTCTTACTCAGCACTGCAAATGAGGTTCTTTCCTATGTATCATGAAATGGTTCAATGGATAAGGTATGAGGGGAAGGCAAATGATCCTGAAATCATTGAATTGGTGAGGCAGGGATCATTGAGGCCAACAACTGTGGGTTCAACAGCTCGTTTAGCAGCTAAGACTAACCACATTAGAGAGAATTCTACTAACCATAGATAA 3600 0.3992 MAELGRRRMRGEKRKKLHLSKIYSFACGRSSFKGDHSQIGGRGYSRVVFCNEPDNFEAGIRNYADNSVRSTKYTPATFLPKSLFEQFRRVANFYFLVTGILAFTKLAPYTAVTAILPLTIVIGATMVKEGIEDWRRKKQDMEVNNRRVKVHKGHGTFEYTEWKNLRVGHIVKVMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEVTSSLHEDFEFSDFKATIKCEDPNANLYSFVGSMEFEEQQHPLSPQQLLLRDSKLRNTDYIFGAVVFTGHDTKVIQNSTDPPSKRSKIERKMDKIIYFLFCILFLMAFVGSIFFGIATKDDLDDGVMKRWYLRPDDSTIFFDPKRAPAAAIFHSLTALMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYEEADKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERAMDRKNGSPLINDIISESPDRNAPIKGFNFTDERIMNGNWVNESHVDVIQNFFRLLAICHTAIPEVDEGTGNVSYEAESPDEAAFVIAAREIGFEFYKRTQTSLSMYELDPVSGNKVERMYKLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLAKDGREFEEKTSEHVHEYADAGLRTLILAYRELDEEQYKEFDKKLFQAKNSVSADQETLIEEVSDKIERNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQLIIHLETPEIQALEKGGDKSAIAKASRESIRRQISEAAQQVTTSRGTSQKAFALIIDGKSLTYALEDNTKGMFLELAIRCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYNVFFSSLPVIALGVFDQDVSARYCQKFPMLYQEGVQNILFSWRRILGWMLNGFISAIIIFFFCTKAMEIQAFDEEGRTAGRDILGATMYTCVVWVVNLQMALAISYFTLIQHIFIWGTIALWYLFLIVYGAIPSSFSTNAYKVFIETLAPSPSFWIVTLFVVISTLIPYFSYSALQMRFFPMYHEMVQWIRYEGKANDPEIIELVRQGSLRPTTVGSTARLAAKTNHIRENSTNHR. 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01982 1199 SFLD p-type atpase 414 917 IPR044492 -
Seca10g01982 1199 NCBIfam phospholipid-translocating P-type ATPase 63 1151 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca10g01982 1199 ProSitePatterns E1-E2 ATPases phosphorylation site. 434 440 IPR018303 -
Seca10g01982 1199 NCBIfam HAD-IC family P-type ATPase 837 948 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca10g01982 1199 Pfam Phospholipid-translocating ATPase N-terminal 49 115 IPR032631 -
Seca10g01982 1199 Gene3D - 702 906 IPR023214 -
Seca10g01982 1199 Pfam Phospholipid-translocating P-type ATPase C-terminal 894 1144 IPR032630 -
Seca10g01982 1199 SUPERFAMILY HAD-like 427 921 IPR036412 -
Seca10g01982 1199 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1155 - -
Seca10g01982 1199 Gene3D - 124 294 - -
Seca10g01982 1199 SFLD C1.7: P-type atpase like 414 917 - -
Seca10g01982 1199 CDD P-type_ATPase_APLT_Dnf-like 65 1015 - -
Seca10g01982 1199 FunFam Phospholipid-transporting ATPase 124 294 - -
Seca10g01982 1199 SUPERFAMILY Calcium ATPase, transduction domain A 149 291 IPR008250 -
Seca10g01982 1199 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Seca10g01982 1199 PRINTS P-type cation-transporting ATPase superfamily signature 866 885 - -
Seca10g01982 1199 FunFam Phospholipid-transporting ATPase 543 701 - -
Seca10g01982 1199 Pfam Cation transport ATPase (P-type) 538 627 - -
Seca10g01982 1199 Gene3D - 545 701 IPR023299 GO:0000166
Seca10g01982 1199 SUPERFAMILY Calcium ATPase, transmembrane domain M 60 1144 IPR023298 -
Seca10g01982 1199 FunFam Phospholipid-transporting ATPase 701 906 - -
Seca10g01982 1199 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 500 703 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01982 Seca-Chr10 22325373 22333230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01982 17 1192 Primary Pumps ATPases AT1G68710 75.392 0.0 1932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01982 K01530 - gmx:100785037 2162.5