Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01980 ATGCCACCCACTCTTCCCTCTTCAACTGGATCAGATTCATCCTTTTTTAAGACACATTCCTCTGCTCCTTTTATAAGAAGTGGCTCTGGCAGTGATGTTGTGTATACACCATCTGACCCTGGTGGACTTGGCAACTCAAGGTCATGGTTTACATATGAAGAACTAATCAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTGTATAAAGGATGTTTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAGTTGGTGGAGGACAGGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGATAACAGAAGACTACTTGTCTATGACTATGTCCCTAACGATACTCTTTATTTTCATCTACATGGGGAAAGTAAGCCTGTGCTAGATTGGGCAAAGCGTGTTAAAATTGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGTAATCCTCGGATTATTCATAGGGATATCAAGCCATCAAACATTCTTTTGGATCACAACTATGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCATATACACATATATCTACACGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCATCAAGTGGCAAATTGACTGAGAAGTCTGATGTATTTGCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGGCGGAAGGCGGTAGATGCATCCCAACCCTTGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTGAGTCAAGCACTTGAGAGTGAAGAATTTGAGAGTTTGGTAGATACAAGGCTAGAAAGAAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGCAGCTTCAGATCTAACTAACGGAATGCGACTTGGGGAAAGCCAGGCCTTTGACTCTGCACAGCAATCTGAAGAAATAAGATTGTTTCGGAGGATGGCATTTGGTAACCAAAATTATAGCTCAGATTTTTTTAGCCAAGGTAGTTTGAATGCATGA 1170 0.4265 MPPTLPSSTGSDSSFFKTHSSAPFIRSGSGSDVVYTPSDPGGLGNSRSWFTYEELIKATNGFSSQNLLGEGGFGSVYKGCLPDGREIAVKQLKVGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNDTLYFHLHGESKPVLDWAKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDHNYEARVSDFGLAKLALDAYTHISTRVMGTFGYVAPEYASSGKLTEKSDVFAFGVVLLELITGRKAVDASQPLGDESLVEWARPLLSQALESEEFESLVDTRLERNYIDSEMFCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAASDLTNGMRLGESQAFDSAQQSEEIRLFRRMAFGNQNYSSDFFSQGSLNA. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01980 389 SMART serkin_6 62 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01980 389 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Seca10g01980 389 FunFam Proline-rich receptor-like protein kinase PERK8 35 137 - -
Seca10g01980 389 SUPERFAMILY Protein kinase-like (PK-like) 44 333 IPR011009 -
Seca10g01980 389 Pfam Protein kinase domain 64 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01980 389 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 36 370 IPR047117 -
Seca10g01980 389 Gene3D Phosphorylase Kinase; domain 1 42 137 - -
Seca10g01980 389 FunFam proline-rich receptor-like protein kinase PERK8 138 349 - -
Seca10g01980 389 ProSiteProfiles Protein kinase domain profile. 62 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01980 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Seca10g01980 389 CDD STKc_IRAK 68 338 - -
Seca10g01980 389 Gene3D Transferase(Phosphotransferase) domain 1 138 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01980 Seca-Chr10 22315618 22322368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01980 1 384 Trihelix Transcription Factor Family AT5G38560 70.694 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca10g01980 Pkinase 8.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01980 - - gmx:100794393 693.345