Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01975 ATGGAGAAAGATCACAACTATTCGCAACCACCACCCATGCCTCCAAGTTTCAACACAACACTTCATGACTACCCTCTTGATTTGTATCCACAAAATCAACATGAAGAACTCATCAAGTTTCGAATTGGTGGTGAAAACAACAACAACAACAACGAGATGGTCATGGATTACAATATGCCTCAAACACAACCACCATCAACAGGCTTCTATGGTGGTACTACCACTTCTTTTGATAAACTGAGTTTTGCAGATGTGGTGCAGTTTGCAGATTTTGGACCCAAACTAGCCTTAAACCAAAGCAATAACAAGAACTGTAGTGAAGAATCAGGGATTGACCCTGTGTATTTTCTCAAGTTTCCTGTGTTGAATGACAAGATGGAGGACCAAAATTTGATGGGTGATGGAGAAAATGATGAGAGGTTCAACTTGGTGAGCATGGAAGATAAGTCAAGAGTGGGAGGAGAAGAAGAAGAAGAGGGAATGATGATAAGAGATCAAGATGAAGAAACAACTCGTGTTGTTTCTGATGACAACAACTCAGTGCAGCAGCAGCATCATGAGAAGAATATTCCTTTGGTGCAGCAGCAACAGGAAAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAGCGCATGACTCACATAGCAGTTGAAAGGAACAGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCTTATGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGAAGGAGACTGCTTGGAGAAGCTCAATCAAGACAACAGGTTGGGGATTCATCAGCTCTTGCATCTGCACAACAGCAGCAGCCTCCATTCTTTCCACCTTTGGCTTTGCCAAATGATGATGAGCAGATGAAGCTTGTTGAGTTAGAGAGTAGTGGACTTCGTGAAGAAACAGCAGAAAGCAAGTCTTGTTTGGCAGATGTAGAAGTGAAGCTTCTAGGATTTGATGCAATGATCAAAATCCTATCAAGGAGAAGGCCAGGACAGTTGATTAAAACCATTGCTGCCCTTGAAGATCTGCAGCTTATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCTAGCTCCGTTCAGCAGATACTGAGTTTTATACATGCAAACACTAGCATGTGA 1290 0.4217 MEKDHNYSQPPPMPPSFNTTLHDYPLDLYPQNQHEELIKFRIGGENNNNNNEMVMDYNMPQTQPPSTGFYGGTTTSFDKLSFADVVQFADFGPKLALNQSNNKNCSEESGIDPVYFLKFPVLNDKMEDQNLMGDGENDERFNLVSMEDKSRVGGEEEEEGMMIRDQDEETTRVVSDDNNSVQQQHHEKNIPLVQQQQENKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQQVGDSSALASAQQQQPPFFPPLALPNDDEQMKLVELESSGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQILSFIHANTSM. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01975 429 SMART finulus 222 273 IPR011598 GO:0046983
Seca10g01975 429 MobiDBLite consensus disorder prediction 1 20 - -
Seca10g01975 429 FunFam Basic helix-loop-helix transcription factor 207 282 - -
Seca10g01975 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 267 IPR011598 GO:0046983
Seca10g01975 429 MobiDBLite consensus disorder prediction 148 218 - -
Seca10g01975 429 Gene3D - 207 282 IPR036638 GO:0046983
Seca10g01975 429 Pfam Helix-loop-helix DNA-binding domain 217 268 IPR011598 GO:0046983
Seca10g01975 429 PANTHER TRANSCRIPTION FACTOR FAMA 144 420 IPR044283 GO:0003700|GO:0010052
Seca10g01975 429 MobiDBLite consensus disorder prediction 197 218 - -
Seca10g01975 429 MobiDBLite consensus disorder prediction 148 174 - -
Seca10g01975 429 CDD bHLH_AtFAMA_like 219 286 - -
Seca10g01975 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 216 286 IPR036638 GO:0046983
Seca10g01975 429 MobiDBLite consensus disorder prediction 175 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01975 Seca-Chr10 22283867 22286290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01975 71 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 61.867 6.44e-142 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01975 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01975 K26213 - gmx:100813515 546.199