Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01972 ATGCAATCTCCTTCTCAGCCTAGTGTGTGCCATTATGTGTCAACCCATGAAGATGTAGATTGCGCAGTGTGTCTCAGCAAAATGAGAGACAGAGAAGAGATTAGAGTGTTGCGGTGTCACCATGTGTTTCACAGAGATTGCTTGGATACTTGGGTGGGCTTCAACAAAGCCACTTGCCCTCTTTGCAGAGATTCACTACTGTGTTCAACAAGGGAGTGA 219 0.4612 MQSPSQPSVCHYVSTHEDVDCAVCLSKMRDREEIRVLRCHHVFHRDCLDTWVGFNKATCPLCRDSLLCSTRE. 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01972 72 SMART ring_2 21 62 IPR001841 -
Seca10g01972 72 PANTHER - 14 67 - -
Seca10g01972 72 SUPERFAMILY RING/U-box 14 68 - -
Seca10g01972 72 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 67 IPR013083 -
Seca10g01972 72 ProSiteProfiles Zinc finger RING-type profile. 21 63 IPR001841 -
Seca10g01972 72 Pfam Ring finger domain 20 63 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01972 Seca-Chr10 22217140 22217358 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01972 20 67 C3H Transcription Factor Family AT1G15100 54.167 2.64e-14 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01972 K16282 - pcin:129296604 87.0409