Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01971 ATGCTCATAAAGTACTTAATTCTACTTTACACTCATCTGAGATGGGTGTTAGATTTCCTTCTATATTATCCCTTTTACAAGCTCCATGATGTGCCAATAATTGGAGATCAAGAGATGAGTATATGCCATTATGAAGGCTCAGAGGAAGATGTAGATTGTGCTGTGTGTCTCTGCAAAATTGAAGAAGGAGAAGAGATTAGAGTGCTGAGATGTGAACATATGTTTCACAGAAATTGCTTAAATAGATGGGAAAGTGGTTTCAAGAATTATGCCACTTGCCCTCTTTGCAGAGAAGCAGTGGGCCCAAGAAAGGTCATCAGTGAGCTTGGTGCTCAAGTTCTGTTGTTTGAGTTTTGTAATTCTATCCGTACTGATGATGACCGTCATACATGGTGGCTACGCTGA 405 0.4 MLIKYLILLYTHLRWVLDFLLYYPFYKLHDVPIIGDQEMSICHYEGSEEDVDCAVCLCKIEEGEEIRVLRCEHMFHRNCLNRWESGFKNYATCPLCREAVGPRKVISELGAQVLLFEFCNSIRTDDDRHTWWLR. 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01971 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 104 IPR013083 -
Seca10g01971 134 Pfam Ring finger domain 52 97 IPR001841 -
Seca10g01971 134 PANTHER - 33 108 - -
Seca10g01971 134 SMART ring_2 53 96 IPR001841 -
Seca10g01971 134 SUPERFAMILY RING/U-box 45 103 - -
Seca10g01971 134 ProSiteProfiles Zinc finger RING-type profile. 53 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01971 Seca-Chr10 22198178 22198582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01971 52 113 C3H Transcription Factor Family AT1G15100 48.387 4.80e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01971 K16282 - mof:131154354 132.494