Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01919 ATGGCCTCAAAAACCAGAAGTTCTACCATTCAGGTAGCTCTCATAGTTACTTTTCTTACGACCAATGTTTTATCTGATGACAAGATACCAATTCCTGATGGAAAGTCCCAATTGGACGCCTGGTTTAATAAAAATGTAGCTCCCTTTGCTCAACGAAAGAGCAGCTTAGACCCTGCATTGGTGACTGCAGAGAATGGTGTTAAGGTTGTGAAGGTCATGCAAGATGGCAGTGGGGATTTCAAAACCATCACTGATGCCATTAACAGCATACCTAACGGGAACACCAAGCGTGTGATTTTATACATTGGGGGTGCAAATTATCAAGAGAAAATCAAAATTGAAAAGACAAAACCTTTTATCACCTTATATGGGGAACCAAAAAACATGCCAAACCTGACATATGGGGGCACTGCACAACAATATGGCACTGTTGATAGTGCTACATTGATTGTTGAATCAGATTACTTCGTAGCTGCTAACATCATCATCTCGAATTCTGCTCAAAGACCTGATGGAAAAAGGGTAGGAGCTCAAGCGGTTGCATTGAGAGTTTCTGGTGACAAAGCAGCATTTTATAATTGCAAGCTCTTTGGATTCCAGGACACAGTGTGTGATGATAGGAATAGGCATTTTTTCAAAAACTGCTTAATTCAAGGCACTGTGGATTTCATTTTTGGAAGTGGGAAGTCACTATATTTGGACACTGAATTGAAAGTACTTGGCGACAGTGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGATGATGAAGATAATGTCTACTCATTTGTGCATTGTGATATTACTGGAACTGGATCTGGCACTTTCTTGGGCAGAGCATGGTTTTCTCATTCCAAAGTGGTTTATGCTTACACCACTATGAGTAATGTTGTGAATCCAGAAGGGTGGAGTAACAACATGCACTCTGAATATGACAGAACAACTTTTTTTGGAGAATACAAGAACAAGGGACCTGGTGCAGATCCCAAAAAGCGCGCTCTTTTCACAAAGCAACTAAGTGATGCAGAGGTCAAACCTTTCATAACTCTTGGAATGCTTGAAGGCTCCAAATGGCTACTTCCTCCTCCATCCCCTAAAGTCTAA 1107 0.411 MASKTRSSTIQVALIVTFLTTNVLSDDKIPIPDGKSQLDAWFNKNVAPFAQRKSSLDPALVTAENGVKVVKVMQDGSGDFKTITDAINSIPNGNTKRVILYIGGANYQEKIKIEKTKPFITLYGEPKNMPNLTYGGTAQQYGTVDSATLIVESDYFVAANIIISNSAQRPDGKRVGAQAVALRVSGDKAAFYNCKLFGFQDTVCDDRNRHFFKNCLIQGTVDFIFGSGKSLYLDTELKVLGDSGMTVIVAQARKSDDEDNVYSFVHCDITGTGSGTFLGRAWFSHSKVVYAYTTMSNVVNPEGWSNNMHSEYDRTTFFGEYKNKGPGADPKKRALFTKQLSDAEVKPFITLGMLEGSKWLLPPPSPKV. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01919 368 Pfam Pectinesterase 70 349 IPR000070 GO:0030599|GO:0042545
Seca10g01919 368 SUPERFAMILY Pectin lyase-like 69 361 IPR011050 -
Seca10g01919 368 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Seca10g01919 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 63 360 - -
Seca10g01919 368 FunFam Pectinesterase 65 362 - -
Seca10g01919 368 Gene3D - 65 363 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01919 Seca-Chr10 21586731 21588899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01919 9 365 Carbohydrate Esterase AT1G69940 57.143 6.05e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01919 K01051 - gmx:100786427 587.8