Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01911 ATGGGAAGATCTCCATGCTGTGATGAAAATGGTTTGAAGAAAGGACCTTGGACTCCTGAAGAAGATCAGAAGCTTGTAAACTACATTGAAAAACATGGTCATGCAAGCTGGAGAGCTCTTCCAAAACTTGCAGGACTCAACAGGTGTGGTAAAAGTTGCAGGTTAAGGTGGACAAACTACTTGAGGCCTGACATCAAAAGAGGCAAATTTTCCCAAGAAGAAGAACAAACAATTCTTAATCTCCATGCCATCCTTGGAAACAAATGGTCAACAATTGCAAGCCACTTGCCGGGACGGACAGATAATGAAATAAAGAATTTTTGGAACACTCATCTGAAGAAGAAGCTGATTCAAATGGGTTATGATCCAATGACACATCAGCCTAGAACTGATATATTCTCTGCAGGCTTGTCTCATCTCATAGCACTGGCTAATTTGAAAGAACTCTTGGACCATCAGCCATGGGAACCACAAAATAATGCTGTAAAACTACAAGCAGAGGCCATCCAACTAGCCAGGCTCCAATGCTTACAAAACCTTCTGCAACCACAAGCTTCAACGTCTACTCATCAGCCTGCAGAGCCTAACACAAACACCATTGGAATTGGAGGTTGTGGTCTCCAATTTATCAATGATTCCATCCCTTTCTCTCACATGCCTGACTTGAAAACACCACCTTCTTGTGCCTATGAACAGTACTCATTAAGTGCTCATGAATCCATAGCTTTCTGTCAAGGAGAGAATACTTCTCCTAATAATTCTCCATGGCTTCTTTCATGCTCAAGCACTACTACCCCATCTCCTTCCCATGTGGTTCCACCTATGAGTATGACTGAGACTAATATGGCAGATAATTGCACTGCTTCCACTATTTGGCCTGAGCTCCTGCTAGAGGACCCTTTGTTCAATGTCATTGTCTAA 921 0.4256 MGRSPCCDENGLKKGPWTPEEDQKLVNYIEKHGHASWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILNLHAILGNKWSTIASHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSAGLSHLIALANLKELLDHQPWEPQNNAVKLQAEAIQLARLQCLQNLLQPQASTSTHQPAEPNTNTIGIGGCGLQFINDSIPFSHMPDLKTPPSCAYEQYSLSAHESIAFCQGENTSPNNSPWLLSCSSTTTPSPSHVVPPMSMTETNMADNCTASTIWPELLLEDPLFNVIV. 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01911 306 SMART sant 66 114 IPR001005 -
Seca10g01911 306 SMART sant 13 63 IPR001005 -
Seca10g01911 306 CDD SANT 69 112 IPR001005 -
Seca10g01911 306 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca10g01911 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca10g01911 306 CDD SANT 16 61 IPR001005 -
Seca10g01911 306 Gene3D - 69 116 - -
Seca10g01911 306 FunFam Transcription factor MYB39 69 130 - -
Seca10g01911 306 FunFam MYB-related transcription factor 13 66 - -
Seca10g01911 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 202 - -
Seca10g01911 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca10g01911 306 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca10g01911 306 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca10g01911 306 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca10g01911 306 Gene3D - 11 67 - -
Seca10g01911 306 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01911 Seca-Chr10 21485453 21487186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01911 1 305 MYB Transcription Factor Family AT5G10280 50.289 1.22e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g01911 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01911 K09422 - qsu:112033310 380.178