Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01907 ATGACCTCAAAAACTAGAAGCTCTATCGTTCATGTAGCTCTCATAGTAGCTTTTCTCACTTCCAATGTTGTTATATCTGATGACAATGTACCAATTCCTGCCGGCAAGTCCCAGTTGGATGCCTGGTTCAATAAAAATGTGGGGTCATTTTCCCAAAGAAAGAGCAGTTTGGATTCTGCATTAGTGGCTGCAGAGAATGGCGCTAAGGTTGTGAAGGTCATGCAAGATGGAAGTGGGGATTTTAAAACCATCACGGATGCCATTAACAACATACCTAATGGGAACACCAAACGTGTGATTGTGTACATTGGTGGTGCAAATTATAATGAGAAAATCAAAATCGAAAGAACAAAACCTTTTGTCACCTTATATGGGGAACCGCAAAACATGCCAAACTTAACATATGGAGGCACTGCACAACAATATGGTACAGTTGATAGTGCTTCATTGATCGTTGAATCAGATTACTTCGTGGCTGCTAATGTCATCATCTCGAATTCCGCTCAAAGACCTGATGGAAAAAGGGCAGGAGCTCAAGCAGTTGCATTGAGAATTTCTGGTGACAAAGCAACATTTTATAATTGCAAGCTATTTGGATTCCAGGACACAATATGTGATGATAGGAATAGACATTTTTTCAAAAATTGCTTAATTCAAGGCACCGTGGATTTCATTTTTGGAAGTGGGAAATCACTATATTTGAACACTGAATTAAAAGTGCTTGGCGACAATGGGATGACTGTGATAGTGGCACAAGCAAGAAAAAGTGATAAAGAGGATAATGTCTACTCATTTGTGCATTGTGATATTACTGGAACCGGATCTGGGACTTTCTTGGGTAGAGCATGGTTTTCTCATTCCAAAGTGGTTTATGCTTACACTAATATGAGCAGCGTTGTGAATCCAACAGGGTGGAATAACAACAATCACCCTGAATATGACAGAACTACTTTTTTTGGAGAGTACAAGAATGAGGGACCTGGTGCAGATCCAAAAAAGCGTTCCTCTTTCACAAAGCAACTAAGTGATGCAGAGGTCAAACCTTTCATAACTCTTAAAATGATTGAAGGTTCTAAATGGCTACTTCCTCCTCCAACTCCCAAAGTATAA 1110 0.3973 MTSKTRSSIVHVALIVAFLTSNVVISDDNVPIPAGKSQLDAWFNKNVGSFSQRKSSLDSALVAAENGAKVVKVMQDGSGDFKTITDAINNIPNGNTKRVIVYIGGANYNEKIKIERTKPFVTLYGEPQNMPNLTYGGTAQQYGTVDSASLIVESDYFVAANVIISNSAQRPDGKRAGAQAVALRISGDKATFYNCKLFGFQDTICDDRNRHFFKNCLIQGTVDFIFGSGKSLYLNTELKVLGDNGMTVIVAQARKSDKEDNVYSFVHCDITGTGSGTFLGRAWFSHSKVVYAYTNMSSVVNPTGWNNNNHPEYDRTTFFGEYKNEGPGADPKKRSSFTKQLSDAEVKPFITLKMIEGSKWLLPPPTPKV. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01907 369 Pfam Pectinesterase 71 357 IPR000070 GO:0030599|GO:0042545
Seca10g01907 369 FunFam Pectinesterase 66 363 - -
Seca10g01907 369 Gene3D - 65 364 IPR012334 -
Seca10g01907 369 SUPERFAMILY Pectin lyase-like 68 363 IPR011050 -
Seca10g01907 369 ProSitePatterns Pectinesterase signature 2. 218 227 IPR033131 -
Seca10g01907 369 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01907 Seca-Chr10 21411932 21424298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01907 10 365 Carbohydrate Esterase AT1G69940 57.584 4.59e-154 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01907 K01051 - gmx:100786427 602.053