Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01906 ATGGTTCACTTGGCCACCATCCCTGGTACTGGCATTAACCCTGCTAGGAGTCTTGGAGCTGTTGTTATCTTCAACCAAGATAAGCCCTGGGATGACCATTGGATCTTTTGGGTAGAACCATTTGCTGGGGCAGCTATTGCAGCCTTCTACCAGACTACCACCAGTTCATCTTAA 174 0.4828 MVHLATIPGTGINPARSLGAVVIFNQDKPWDDHWIFWVEPFAGAAIAAFYQTTTSSS. 58
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01906 57 Gene3D Glycerol uptake facilitator protein. 1 57 IPR023271 -
Seca10g01906 57 Pfam Major intrinsic protein 4 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca10g01906 57 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 53 IPR034294 -
Seca10g01906 57 SUPERFAMILY Aquaporin-like 3 51 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01906 Seca-Chr10 21356538 21356816 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01906 1 51 Major Intrinsic Protein MIP AT2G37170 81.132 3.15e-25 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01906 K09872 - thj:104824231 100.523