Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01896 ATGAAAGCGGGGAAGGGGAACCAGGAAGAGGATGAGTATGAGGAGGAAGATTTCGGTTCTTCCAAGAAACAAGGCCCTTCCTCTGCCCCTAACACTAATAAAGCAGATGCAAAAGCTATTGATAAGGCTAGTGCAATAAGATCGAAACATTCTGTGACTGAGCAGCGAAGAAGGAGCAAGATAAATGAGAGATTCCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTCTTATTAGAGGTTATTGAGTATGTTCAGTACTTACAGGAGAAAGTACAGAAATATGAAGGCTCATATCAAGGTTGGAGTCAAGAGCCTTCGAAGTTGATGCCATGGAGAAATAGTCATTGGCGTGTCCAAAGCTTTGTTGGTCAACCTCCAGCTGTAAAGAATGGCTCAGGTCCGGTATCACCTTTTCCTGGAAAGTTTGATGAAAGCAACATTAGTATCACTCCAACTATGCTTAGTGGCACCCAGAGTATGATAGATCCTGATAATCAGAGCAGAGATATTGTCAGCAAGACAGCAGAGAGACAACCTGATTTAGCAAGCAAGGGAATACCTCTGCCCTTGGCTATGCATGCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTTCTTGCCCATCCTCTTCAGGGAACTGTTTCTGATGCACAATCAACTGAATGCCCAGCAACTAGTGAACCACAGAACCAGCAGGATGAACTGACAGTTGAAGGAGGGACAATTAGCATATCAAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAAGCGCTACAGAGTGCTGGTTTAGATCTGTCACAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAACGAGCAAACAAAGGACCAAGTGGTGGGACCTCTTCTCCCAAGAATCATGATAACCCCCTTTCTAGCCATCAAGCAATTGCACATTTTAGAGATGCAGGCAGTGGGGAAGACTCAGATCAAGCTCAAAAACGAATGAGAACATACAAATGA 1014 0.4389 MKAGKGNQEEDEYEEEDFGSSKKQGPSSAPNTNKADAKAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQSFVGQPPAVKNGSGPVSPFPGKFDESNISITPTMLSGTQSMIDPDNQSRDIVSKTAERQPDLASKGIPLPLAMHANMSVPVRSDGVLAHPLQGTVSDAQSTECPATSEPQNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGKRANKGPSGGTSSPKNHDNPLSSHQAIAHFRDAGSGEDSDQAQKRMRTYK. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01896 337 MobiDBLite consensus disorder prediction 1 59 - -
Seca10g01896 337 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Seca10g01896 337 Gene3D - 43 116 IPR036638 GO:0046983
Seca10g01896 337 SMART finulus 51 101 IPR011598 GO:0046983
Seca10g01896 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 117 IPR036638 GO:0046983
Seca10g01896 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 335 IPR044295 GO:0003700|GO:0006351|GO:0046983
Seca10g01896 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Seca10g01896 337 MobiDBLite consensus disorder prediction 222 242 - -
Seca10g01896 337 MobiDBLite consensus disorder prediction 318 337 - -
Seca10g01896 337 FunFam BHLH domain class transcription factor 43 115 - -
Seca10g01896 337 MobiDBLite consensus disorder prediction 40 59 - -
Seca10g01896 337 CDD bHLH_AtBIM_like 44 120 - -
Seca10g01896 337 MobiDBLite consensus disorder prediction 288 337 - -
Seca10g01896 337 MobiDBLite consensus disorder prediction 288 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01896 Seca-Chr10 21226494 21231853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01896 1 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 57.143 4.33e-119 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01896 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01896 - - gmx:100816055 586.645